Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00423 ATGGAGAAGAATCGGAGCGGAGAAAGAGGAGCGATGGCGTTTTCGTCCTCGGTGGATAGCAATATGAGGGCTCGTCTGAGTAACACCACTAGCACCGGCAACAGAGCTGCGGCACTTGTGCAATACAATGCCGATGCTGGAATTATGAGCAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAATTATTCGAGGTCAGTTCTTGAAGCTAATGAATCTGTTCCCGAAGAACAAATTGCTGCTTATCTGTCTAGGATTCAGAGGGGTGGGCTGGTTCAATCGTTTGGTTGTTTGCTTGCGATTGATGAGTCTAGTTTTAAGATTATTAGCTATAGTGAGAACTGTTTTGAAATTTTGGGGTTACATGATGAATTTGAGTCGGCACAGGGGAAGGGATTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCTAAAGCAGCTTCTTCCAGGGAGATTTCGTTGTTGAATCCTGTTTGGGTCTATTCTAGGACTACTGAGAAGCCATTTTATGCTATATTGCATAGGATTGATGTGGGGATTGTGATTGATTTAGAGCCTACACGATCTTTTGATCCTGCATTGTCGCTTGCTGGCACGGTTCAGTCGCAGAAACTAGCGGTTCGGGCGATTTCTAGGCTGCAGGCTCTACCTGGTGGTGATATAGGTGTTCTGTGTGACACGGTTGTGGAAGATGTGCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGACTTAGAGCCATATCTCGGTTTGCATTATCCTGCCATTGATATACCGCAAGCTGCTCGTTTTTTGTTCAAGCAAAACCGCATCAGGATGATTTGTGATTGCCACGCGAAGCCTGTGCAGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTTAATTCAACACTTCGATCACCCCATAGCTGTCATTTGCAGTACATGTCGAATATGGGTTCCTTAGCCTCGTTAGCAATGGCTGTAATCATGAATAGTGACGACTCACCAACACGGTTATGGGGCTTGGTTGTGTGCCACCATACTTCTCCGCGATATGTCCCTTTCCCTCTTCGTTATGCTTGTGAGCTTCTCATCCAGGCATTTGGGCTGCAGCTTTACATGGAGCTTCAATTGTCATTACAATTAACAGAGAAAAAGATTCTCAAGACGCAAACGTTCCTCTGTGACATGCTTCTTCGAGGCTCCCCATGTGCATTGCTGATGCAGTCTCCTAGTATAATGGATCTTGTTAAGTGTGATGGTGCAGCATTGTACTACAATGGGGCATGTTGTTTACTTGGTATAACTCCAACTGAAGCACAAGTCAAAGATCTTGTAGAGTGGGTACTTAATAGCCATGGGGATTCTACGGGACTGAGCACGGATAGTTTGGCTGATGCTGGCTACCCCGAAGCTGCTTCTCTAGGTGATGCAGTGTGTGGTATGGCAGCTGCAAGAATTGGTTCCAAGGATTTCTTATTCTGGTTCAGGTCTCAGGCAGCAAAGGAAATCCAATGGGGAGGAGCCAAGCATCATCCGGATATTAAGGACGATGGTGGAAAACTGCACCCAAGATCATCATTTAAAGCGTTTCTTGAAGTTGCAAAGAGTAGAAGTTTGCCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCGTTGCAGCTTATTATGAGGGAGTCTTTTTCTAACTCTAGGGACAGTGATTCAAAGGTAGAAGCTTCTGCCCAGCTGAGTGATACTGTAGTCCAGGATATCGATGAACTCAGTTCAGCAGCTTGCGAAATGGTGAGGTTGATTGAAACAGCAACTGTTCCAATTTTTGGGGTTGATTCAACTGGTGTGATCAATGGATGGAATGCTAAAATTTCTGAACTCGTAGGATTACAAACTAGTGAAGCTTTGGGTAGATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGTTGGAGATTTACTTTCCCATGCTCTTCAAGGTAAGGAAGACAACAATGTGGAGTTAAAACTGAGAAGTTTTCGATCTGATAAAGAAAATTCTACCATTTATATTGTCGTTAATGCTTGCACAAGTAGGGATTACACAAACAAAATTGTCGGGGTTTGCTTTGTCGGGAAAGATATTACGTCCGAGAAAGGTGTGATGGATAAATTTATACGTCTGCAGGGAGATTATAAGGCTATTATTGAAAGTTTGAGTCCATTGATCCCACCGATATTTGTTTCGGACGTGAACGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAGCTTTCTGGTTGGAGAAAAGATGAAGTTATAGGAAAAATGCTAGCTGGGGAGATATTTGGAAATTTTTGTAGGTTGAAAGGTCTAGATACGCTCACTAGTTTTATGATCCTTTTATATCAAGGTATCGACGGTCAAGAAACCGAGAAGTTTCCGTTAGGATTTTTCAATAAGGATGGGAACTATGAGGAGGTTCTTTTAACATCAAACAAAAGAACTGATGCAGAAGGTAACATCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCAACTTGCATGGGGTCTCTGAAGGACTTGGAGTGGGCGACAGAGAGGGAAATTTGCAGCTTAAGGAGTTGACTTACATAAAGCAGGAGATGAAAAATCCTTTAAATGGCATTAGATTTACTCATGAACTTCTTGTAAATTCAGGCATTACAGAAAACCAGAAGCTCTTTCTCGATACCAGTGGCGCATGCGAGAGACAAATCATGACGATCATAGAGGATATGGACTTCAGAAGTTTAGAAGGAGGCCAAGTAGAGATAAACAGAGAAGAATTTATCCTCGGGAGTGTGCTGGACGCCATTATCTGTCAAATCATGACTGTTGTCAGAGAGAAGAAAATACAACTTTTTCATGAGATTCCAGAAGAAATCAAAGTGTTAAATCTTTGTGGCGATCATATTAAGCTTCAGTTGGTTTTGTCAGATTTCTTGCTTAATGTCGTGCAGTACGCGCCTGTTCCGGATGGCTGGGTTGAAATCAAAATTTCATCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCTCATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGCCAGCAATGGACTTCAAAGCAAGGCCTTGCTCTAAACCTGTCACGTAGACTTCTCAATAAGTTGAGCGGTAACATACGCTATGTTAGAGAGCAAACTAAATGCTACTTCATCATCGATCTCGAGCTCAAATTAAGGCGCTCGAGAGGGTCGATGGAAGCTACTACAAGCCAAGGGACATGA 3393 43.06 MEKNRSGERGAMAFSSSVDSNMRARLSNTTSTGNRAAALVQYNADAGIMSKFEQSDASGESFNYSRSVLEANESVPEEQIAAYLSRIQRGGLVQSFGCLLAIDESSFKIISYSENCFEILGLHDEFESAQGKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTEKPFYAILHRIDVGIVIDLEPTRSFDPALSLAGTVQSQKLAVRAISRLQALPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCHAKPVQVIQSDELKQPLCLVNSTLRSPHSCHLQYMSNMGSLASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACELLIQAFGLQLYMELQLSLQLTEKKILKTQTFLCDMLLRGSPCALLMQSPSIMDLVKCDGAALYYNGACCLLGITPTEAQVKDLVEWVLNSHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAARIGSKDFLFWFRSQAAKEIQWGGAKHHPDIKDDGGKLHPRSSFKAFLEVAKSRSLPWEVQEINAIHSLQLIMRESFSNSRDSDSKVEASAQLSDTVVQDIDELSSAACEMVRLIETATVPIFGVDSTGVINGWNAKISELVGLQTSEALGRSLVNEIVHEDSRGTVGDLLSHALQGKEDNNVELKLRSFRSDKENSTIYIVVNACTSRDYTNKIVGVCFVGKDITSEKGVMDKFIRLQGDYKAIIESLSPLIPPIFVSDVNGYCCEWTAAMEKLSGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTSFMILLYQGIDGQETEKFPLGFFNKDGNYEEVLLTSNKRTDAEGNIIGCICFLQIVQPNLHGVSEGLGVGDREGNLQLKELTYIKQEMKNPLNGIRFTHELLVNSGITENQKLFLDTSGACERQIMTIIEDMDFRSLEGGQVEINREEFILGSVLDAIICQIMTVVREKKIQLFHEIPEEIKVLNLCGDHIKLQLVLSDFLLNVVQYAPVPDGWVEIKISSGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWTSKQGLALNLSRRLLNKLSGNIRYVREQTKCYFIIDLELKLRRSRGSMEATTSQGT 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2652153 2659056 - Carg14551-RA Car18g00423 166125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00423 1130 Pfam GAF domain 228 399 IPR003018 GO:0005515
Car18g00423 1130 Pfam PAS fold 82 194 IPR013654 GO:0006355
Car18g00423 1130 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Car18g00423 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Car18g00423 1130 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Car18g00423 1130 Pfam PAS fold 617 732 IPR013767 GO:0006355
Car18g00423 1130 Pfam PAS fold 748 867 IPR013767 GO:0006355
Car18g00423 1130 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Car18g00423 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Car18g00423 1130 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Car18g00423 1130 Pfam His Kinase A (phospho-acceptor) domain 894 953 IPR003661 GO:0000155|GO:0007165
Car18g00423 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1111 IPR003594 -
Car18g00423 1130 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car13g00449 Car18g00423 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01399 Car-Chr14:11804661 Car18g00423 Car-Chr18:2652153 0 dispersed
Car18g00423 Car-Chr18:2652153 Car19g00664 Car-Chr19:7904045 0 dispersed
Car13g00449 Car-Chr13:6899041 Car18g00423 Car-Chr18:2652153 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00423 K12123 - csv:101214900 1957.18