Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00462 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGCCTCCTGAAGGTGAGAGGAGGGTCCTGAATTCTGAGCTTTGGCATGCGTGTGCGGGTCCTCTTGTTTCTCTTCCGGCTGTTGGGAGTCGGGTTGTTTATTTTCCTCAAGGACATAGTGAGCAGGTTGCTGCATCTACCAACAAAGAGGTGGATACCCAGATCCCAAATTACCCAAGTTTACCACCGCAGCTCATCTGTCAACTTCACAACTTGACAATGCATGCGGATGCTGACACTGATGAAGTATACGCTCAGATGACTTTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCTGAGTTGGGCACTCCAAGTAGGCAGCCAACAAATTACTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGGGGGTTTTCGGTTCCTCGCCGTGCTGCTGAAAAAGTATTTCCTCCTTTGGACTTCTCCATGCAGCCTCCAGCCCAAGAGCTAATTGCGAGGGACCTACATGATAATGAGTGGAAATTTAGACATATTTTTCGTGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTTGTGAGCGCTAAACGACTCGTTGCTGGTGATGCTGTGCTTTTTATCTGGAATGAAAAGAACCAATTACTCCTCGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCTGTTTTGTCGAGTGATAGCATGCATTTAGGACTCCTTGCTGCTGCAGCCCATGCAGCTGCTACCAATAGTCGGTTTACCATATTCTTTAACCCGAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTCGGGATGCGCTTTCGGATGCTGTTTGAAACAGAAGAATCAAGTGTTCGTCGCTACATGGGAACGATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAATTCGCATTGGCGCTCGGTCAAGGTTGGCTGGGACGAGTCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATCGAACCATTAACAACATTTCCAATGTATCCATCACCGTTTCCACTTCGACTGAAGCGACAATGGCCAACCGGACTGCCTTCGTTTGGCATCAAGGATAGTGACCTTGGAATGAATTCTCCGTTCATGTGGCTACGGGGAGATAACAGCGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAAATGGGGTCTCACCATGGATGCATCCGAGGCTTGATCCATCCATGGTCGGTATGCAATCCGACGTGTATCAAGCCATGGCTGCTGCAGCGCTTCAGGAGATGAGAGCGATCGATTATTCCAAACTAGCGCCTGCATCGATGCTGCAATTTCAGCAGCCTCAAGGTCTCCCTTGTCAGCCTTCAACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAATCTCAGCACGCGTTTCTGCAATCCGTTCAAGAACATCTGCAGCATTCTCAGTCCCAAACTCAAACTCAGTCACATCACCTTCCGCCACAATTGCAGCCCGAGCCATCGTTCAATAATCAACAACCGCAGCATCAACAGCAACCAAGACAGCCACAGCCGCAGCCACCGCCACAGCCACAGCCACTGGTTGATCATCAACCGATTCCTTGTACAATCCCTGCTATATCTCAGTTCGCTTCATGTTCACAATCCCAATCACCATCCCTGCAAACCGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCCGATTCCAATGGTAACCCTGTAACCAGTCCTACTGTTTCCCCATTCCATAGTCTTGCAGGGTCGTTTGTCCAAGACGAATCGTCTCAGCTGCTTAACATTCAACGAGCAAATTCAGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGGGCTGCTATTGACCCTCTCTCTACTGGAGCTTCTCAGTACTTTCTTCCTCAAGTAGAAAGTGGTATGTCTCAGAATACGGTTGCATTGCCACCCTTCCCCGGAAGGGAGTGTGCTATCGGTGATCGAGATGAGGGTTCAGATCCAGAAAACCATGTTCTATTTGGTGTGAACATAGAGTCTTCATCCCTTCTAATGCAGAATGGGATGTCGAACCTTAGGGGAGTTGGCAACGATAATGTTTCCACAACACTACCTTTTTCTTCCAACTACATGAGCTCATCCGGTACCGATTTTTCCGTAAATCCAACGACAAATTGCATTGACGAATCGGGTTTCTTGCAGCCTCATGAAAACGTGGGCCAAGTAAACCAACCAAATGGAACTTTTGTCAAGGTTCATAAATCAGGGACCTACAGTAGGTCCTTAGATATAACAAAATTCAACAACTACCTCGAGCTACGCAGTGAGCTTGCTCGCATGTTTGGCCTAGAAGGTGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAACGACGTTCTTCTCCTTGGGGATGGCCCGTGGCCGGAGTTCGTAAACAGTGTATGGTGTATCAAAATACTTTCACCAGACGAAGTTCAGGAAATGGGGAAGCGCGGTTTAGAACTTCTCAACTCTATGCCAATCCAGAGGCTTTCGAACAATACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTGATATCAGGGATAACCTCTGTCGGTCCTTTCGACTACTGA 2703 48.43 MRLSAAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDTQIPNYPSLPPQLICQLHNLTMHADADTDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRQWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGNGVSPWMHPRLDPSMVGMQSDVYQAMAAAALQEMRAIDYSKLAPASMLQFQQPQGLPCQPSTLMQPQMLHQSQSQHAFLQSVQEHLQHSQSQTQTQSHHLPPQLQPEPSFNNQQPQHQQQPRQPQPQPPPQPQPLVDHQPIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPFHSLAGSFVQDESSQLLNIQRANSVIPSAGWPSKRAAIDPLSTGASQYFLPQVESGMSQNTVALPPFPGRECAIGDRDEGSDPENHVLFGVNIESSSLLMQNGMSNLRGVGNDNVSTTLPFSSNYMSSSGTDFSVNPTTNCIDESGFLQPHENVGQVNQPNGTFVKVHKSGTYSRSLDITKFNNYLELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPDEVQEMGKRGLELLNSMPIQRLSNNTCDDYGSRQDSRNLISGITSVGPFDY 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2973511 2984175 - Carg22559-RA Car18g00462 166164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00462 900 MobiDBLite consensus disorder prediction 577 598 - -
Car18g00462 900 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Car18g00462 900 MobiDBLite consensus disorder prediction 537 555 - -
Car18g00462 900 Pfam AUX/IAA family 760 856 IPR033389 -
Car18g00462 900 MobiDBLite consensus disorder prediction 483 557 - -
Car18g00462 900 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car18g00462 900 ProSiteProfiles PB1 domain profile. 767 851 IPR000270 GO:0005515
Car18g00462 900 MobiDBLite consensus disorder prediction 483 536 - -
Car18g00462 900 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01289 Car18g00462 CCT
Car13g00401 Car18g00462 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00075 Car-Chr7:485066 Car18g00462 Car-Chr18:2973511 0 dispersed
Car09g00105 Car-Chr9:519797 Car18g00462 Car-Chr18:2973511 4.35E-144 dispersed
Car15g00728 Car-Chr15:4049286 Car18g00462 Car-Chr18:2973511 0 dispersed
Car18g00462 Car-Chr18:2973511 Car12g00878 Car-Chr12:8687736 4.56E-152 dispersed
Car13g00401 Car-Chr13:6546260 Car18g00462 Car-Chr18:2973511 0 wgd
Car18g00462 Car-Chr18:2973511 Car03g01289 Car-Chr3:9838753 0 wgd
Car18g00462 Car-Chr18:2973511 Car07g00074 Car-Chr7:482444 1.16E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5159 PF02309 AUX_IAA 1.10E-06 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00462 - - csv:101211705 1595.48