Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00478 | ATGAGTCATTTTTCAGGGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAAAAAGATAATCAACTTTGTGCAGATTGTGGTGCTCCTGATCCTAAATGGGCCTCTGCAAATATTGGTGTATTTGTATGCTTAAAATGTAGTGGTGTACACAGAAACCTTGGAACGCATATATCAAAGGTAATACTCACCTTTCTCAAGATACAGATTTCGGATTGCATTCCTTTCTTCTTTCCGTATGTCATTGGAATAAACACTATAACTACGTTTAAGTTTTTCCGATGTTCTGTGGTTTTATCAATAACATTGGATGAATGGACTGATGATGAGATTGATGCCATGATGGAGGTTGGAGGAAATGGTTTTGCTAATTCAATATATGAGGCTTTTATTCCTGATGGATATACAAAGCCTGGACCGAGTGCTAGCCATGAGGAGCGTTCAAAGTTCATAAAGTCCAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTATACCCAATAACTCCTCAAAGACTCCTGAGGAGCCAAGTTGTTTTCAGGTGAACTCTTCAAAGAGATCACCACAGGAAGGCATGGTTGAATTTATGGGACTACTGAAAGTTAAGGTGATTAAAGGCACAAACTTAGCTGTGAGAGATATGAAATCCAGTGATCCTTTCATTACCGTGACTCTTGGGCAACAGACTGCGAAAACAACGGTGAAAAAGAAAAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCGGTTCCTCAAGAATACGGTCCCTTAGAGTTGCCAATGTTAACATCAGCAATGGCATTTGGAGATGCTGAAATATATGGGGATATGCAGATAGGAAAATGGTTGAAATCAGACGACAACGCCCTTATCGACGACAGTGCTGTCAATATCGTGGACGGGAAGGTGAAACAAGAGGTGTCGCTCAAGCTCGGAAACGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAGTAG | 1023 | 40.18 | MSHFSGDFRRPESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFVCLKCSGVHRNLGTHISKVILTFLKIQISDCIPFFFPYVIGINTITTFKFFRCSVVLSITLDEWTDDEIDAMMEVGGNGFANSIYEAFIPDGYTKPGPSASHEERSKFIKSKYELQEFLKPSLRIIPNNSSKTPEEPSCFQVNSSKRSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITVTLGQQTAKTTVKKKNLNPVWNEELMLSVPQEYGPLELPMLTSAMAFGDAEIYGDMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLGNVESGEVYLELEWMPLDQ | 340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 3183455 | 3186272 | + | Carg22576-RA | Car18g00478 | 166180 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00478 | 340 | Pfam | C2 domain | 206 | 289 | IPR000008 | - | |
| Car18g00478 | 340 | MobiDBLite | consensus disorder prediction | 174 | 193 | - | - | |
| Car18g00478 | 340 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 180 | IPR001164 | GO:0005096 | |
| Car18g00478 | 340 | Pfam | Putative GTPase activating protein for Arf | 16 | 67 | IPR001164 | GO:0005096 | |
| Car18g00478 | 340 | Pfam | Putative GTPase activating protein for Arf | 101 | 168 | IPR001164 | GO:0005096 | |
| Car18g00478 | 340 | ProSiteProfiles | C2 domain profile. | 189 | 305 | IPR000008 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car07g00053 | Car18g00478 | CCT | |
| Car03g01308 | Car18g00478 | CCT | |
| Car13g00382 | Car18g00478 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car15g00768 | Car-Chr15:4349247 | Car18g00478 | Car-Chr18:3183455 | 5.69E-91 | dispersed | |
| Car18g00478 | Car-Chr18:3183455 | Car18g00794 | Car-Chr18:9040590 | 7.13E-81 | dispersed | |
| Car13g00382 | Car-Chr13:6365479 | Car18g00478 | Car-Chr18:3183455 | 0 | wgd | |
| Car18g00478 | Car-Chr18:3183455 | Car03g01308 | Car-Chr3:9994085 | 1.57E-46 | wgd | |
| Car18g00478 | Car-Chr18:3183455 | Car07g00052 | Car-Chr7:343146 | 7.02E-83 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00478 | K12486 | - | csv:101211569 | 489.574 |