Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00489 ATGTGGGATCTCACAATCCACCCTCCTTGGAGGCCAGCGTCCTTGTTGGCACACTGCTTGGTGTCCAGCTCTAATACCATTTGTAAGAGCCCAAGCCCACCGCTAACCGATATTGTTCTCTTTGGACTTTTTCTTTCAAGCTTCCCCGCTTCCCCTCAAGGTCTCTCATACCTATCATCATCACAAGCTCCATTCATTGTAATCGATCTCATCAACCTTCGCTCAATCGATATCAACATTGAAACCGAGATTGCGTCAGTGGAGACCGGCGCCACACTCGGCGAATTATACTATAGAATCGCAAAGAAGAGCCCCATCCATGGCTTTCCAGCAGGGAGCTGCCCCACCGTGGGGGTGGGAGGGCATATAAGTGGAGGAGGCTTTGGAACCCTTTTCAGAAAATATGGTCTTGCAGCTGATAACGTAATTGATGCCAAAATTGTGGACTTCAATGGAAGAATTATGGATAGAAACACCATGGGAGAAGATCTCTTTTGGGCCATTAGAGGAGGTGGAGGAGCAAGCTTTGGAGTCATTTTATCATGGAAACTCAAACTAGTTTCTCTTCCTTCAATTGTTACAACTTTCAATGTTCAAAGAACCCTAAACCAAGGAGGTACTCACCTTTTCCTTAAGTGGCAAGAAATTGCTCACAAACTTGATCAAGATCTCTTCCTTCATGTGACCACAAAAGTTATAGACCAAAAAATGACCAAAACAACATCAAAAACACTCAGCCTTTCATTCACATCCTTATTTCTTGGTTCAATTGATACCCTCATCCCATTAATGGATACCCATTTTCCAGAGCTTGGATTAAAGAGATATCAATGCACTGAAATGAATTGGATTCAATCAGTTCTTTTCTTTGCTGATTTCTCCACAAAATCCCCACTTGAAATTTTGATGCAAAGATTACCTTCAATAAGATCTTCTTTCATAGCAAAATCTGATTATGTTACTTCACCAATTTCACAAAGTGGGTTAGAAGGGCTTTGGGCTAAGCTTCTAGAGAATGAAAATTCTGAGTTGATTTTCACACCTTATGGGGGAAAAATGAGCCAAATTTCTGAATTAGAAACCCCTTTTCCACATAGAAAAGGGAGCATTTTTGGAGTCCAATATTTGGCAACATGGGATGATAGTAATGAAAATGAGAGGCACTTCAGATGGATAAGGGAGGTTTATTCTTATATGGAGCCCTATGTTTCAATGGCTCCAAGAGGTACTTATTTGAATTATAGAGATCTTGATTTGGGAAGAAACTATGGTAGAAATACGAGCTATGAGGAGGCAAAAGTGTGGGGATTGAAGTATTTCAAAGGTAATTTTGAGAGATTGGTGAAGGTGAAGACCAAATTTGATCCTTTAAACTTCTTTTGGAATGAACAAAGCATTCCTCTTTTGTACAATTGTGAAGATGAGGCAAGAATTTGTGAGGTTTACTCAGATTTAGACTCTGCAAATGTTCAAGAAAGATGA 1482 40.35 MWDLTIHPPWRPASLLAHCLVSSSNTICKSPSPPLTDIVLFGLFLSSFPASPQGLSYLSSSQAPFIVIDLINLRSIDINIETEIASVETGATLGELYYRIAKKSPIHGFPAGSCPTVGVGGHISGGGFGTLFRKYGLAADNVIDAKIVDFNGRIMDRNTMGEDLFWAIRGGGGASFGVILSWKLKLVSLPSIVTTFNVQRTLNQGGTHLFLKWQEIAHKLDQDLFLHVTTKVIDQKMTKTTSKTLSLSFTSLFLGSIDTLIPLMDTHFPELGLKRYQCTEMNWIQSVLFFADFSTKSPLEILMQRLPSIRSSFIAKSDYVTSPISQSGLEGLWAKLLENENSELIFTPYGGKMSQISELETPFPHRKGSIFGVQYLATWDDSNENERHFRWIREVYSYMEPYVSMAPRGTYLNYRDLDLGRNYGRNTSYEEAKVWGLKYFKGNFERLVKVKTKFDPLNFFWNEQSIPLLYNCEDEARICEVYSDLDSANVQER 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3295090 3296934 - Carg22587-RA Car18g00489 166191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00489 493 Pfam Berberine and berberine like 411 467 IPR012951 GO:0016491|GO:0050660
Car18g00489 493 ProSiteProfiles PCMH-type FAD-binding domain profile. 10 189 IPR016166 GO:0071949
Car18g00489 493 Pfam FAD binding domain 54 155 IPR006094 GO:0050660
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01320 Car18g00489 CCT
Car13g00361 Car18g00489 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00362 Car-Chr13:6245802 Car18g00489 Car-Chr18:3295090 5.43E-166 dispersed
Car18g00489 Car-Chr18:3295090 Car10g00780 Car-Chr10:4227040 8.38E-09 dispersed
Car13g00361 Car-Chr13:6239647 Car18g00489 Car-Chr18:3295090 0 wgd
Car18g00489 Car-Chr18:3295090 Car03g01318 Car-Chr3:10034258 6.50E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00489 - - mcha:111010911 675.626