Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00494 ATGTTCTGCAATTTGTTTGAGATGGACAATGATAACTATCAGCAAGCGGGGGATTTGACCGATGTAATTCGAGCTAGTTCCGCCGCCACCTCAGCTGCCCACTCATCGGAATTCTCTCTCGGCGACCGCCATCTCTTGCCTCACCTTCCCGCCGATGACTCTTCCATGAATTTTGGAGATCCATTGTTGCTTCCCACTTCTAGTACTCGAGATCCGTTTCTTCATCCCCATTTCTCTTCCTTCAATTTTGATTCTCACGGCGGCGGTTGGGGTTTCACGGCGGCGGAACGGCCTTCTACTGTATTTCCAAGAATGTTGCAGATCTCTCCCACCTCCAAAGTTGGTGACGGTGTAATTACTACTCCTCCATGCGACTCACCGGCCGTGGCCGTAACGGGGAATTCTCCGACCTCGAACCCGCTTTGCTTAAGGGATAATTCCGACCTCCAGATCTCTCCTCCAAGAAATCCCGCCCTTAAAAGAAGGAAGAACCAAGTGAAGAAGGTGGTGTGCATTCCGGCGCCGGCGCCGGCAAACAGCCGATCAAGCAGCGGCGAAGTTGTCCCCTCCGATCTATGGGCATGGAGGAAGTACGGACAAAAACCCATCAAAGGATCTCCATATCCAAGGGGATATTACAGGTGTAGCAGCTCCAAAGGCTGCTCGGCCCGAAAGCAAGTCGAGCGTAGCCGAACCGACCCCAACATGCTCGTGATCACCTACACTTCGGAGCATAACCACCCATGGCCTACTCAACGTAATGCACTAGCAGGCTCAACTCGCTCCCACCCTTCTCGAACCTCCACTTCTACCACACGTATAACAAGCCCAAAACATGAGCACAACAATGAAAACCTAGCAACTGTGACGATAAAGGAGGAGGACATGAATGAAGACCAAACGACGGAGAAAGCAACCACAACAATAACAACAAACCAACATCAGGTCGAGGGAGATCATCAAGAGTTCTTGTACGACTTGATTTTCGACGAATTTGCTGATCAAATGAACGAGCATGATCGTCATCATGCAACGGACACGATGAACGATAACCTTCTCCGGTTTAGTAATCATGGGTTTAGTAAAGGAAATGATGAAGAGCGCAGTAAAGATCCATTTTTGGAGCTCTATGATTGGACAGAGAAGTCAAATGGGAGCTTGTTCAAATAA 1170 49.4 MFCNLFEMDNDNYQQAGDLTDVIRASSAATSAAHSSEFSLGDRHLLPHLPADDSSMNFGDPLLLPTSSTRDPFLHPHFSSFNFDSHGGGWGFTAAERPSTVFPRMLQISPTSKVGDGVITTPPCDSPAVAVTGNSPTSNPLCLRDNSDLQISPPRNPALKRRKNQVKKVVCIPAPAPANSRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTSTSTTRITSPKHEHNNENLATVTIKEEDMNEDQTTEKATTTITTNQHQVEGDHQEFLYDLIFDEFADQMNEHDRHHATDTMNDNLLRFSNHGFSKGNDEERSKDPFLELYDWTEKSNGSLFK 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3548231 3550033 + Carg25395-RA Car18g00494 166196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00494 389 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 96 382 - -
Car18g00494 389 ProSiteProfiles WRKY domain profile. 184 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car18g00494 389 Pfam WRKY DNA -binding domain 191 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car18g00494 389 MobiDBLite consensus disorder prediction 246 276 - -
Car18g00494 389 SUPERFAMILY WRKY DNA-binding domain 187 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car18g00494 389 SMART WRKY_cls 189 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car18g00494 389 MobiDBLite consensus disorder prediction 246 278 - -
Car18g00494 389 MobiDBLite consensus disorder prediction 130 165 - -
Car18g00494 389 Gene3D WRKY domain 162 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car18g00494 389 MobiDBLite consensus disorder prediction 130 153 - -
Car18g00494 389 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 96 382 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00468 Car-Chr13:6993847 Car18g00494 Car-Chr18:3548231 1.44E-34 dispersed
Car14g01866 Car-Chr14:14469529 Car18g00494 Car-Chr18:3548231 1.48E-38 dispersed
Car15g00988 Car-Chr15:7577166 Car18g00494 Car-Chr18:3548231 4.60E-38 dispersed
Car16g00519 Car-Chr16:3310847 Car18g00494 Car-Chr18:3548231 2.57E-37 dispersed
Car18g00494 Car-Chr18:3548231 Car19g00794 Car-Chr19:8597545 2.64E-34 dispersed
Car18g00494 Car-Chr18:3548231 Car07g00043 Car-Chr7:292193 1.30E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5162 PF03106 WRKY 2.00E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00494 - - csv:101220733 526.554