Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00498 ATGTTCACTAATAATAGTGAAAAGGATCGTTCTTCCAAGAGCAGTCATAAAAGTGTTCAGATTGTTGAGATGTTAGGGAGTCCTCAGCATCTGAAGATATCAGCTAGATGGGACCCGCATGAAGCGTGCAGGCCTTTAATTGACGAAGCACCTGTATTTTATCCAACCGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCTTCAAGCAGAAGCTTATGGTATATGCCGGATTGTCCCTCCGCCTTCTTGGAATCCACCATGCGTTCTCAAGGAGAAATGCATATGGGAAAATGACAAATTTTCTACTCGTATTCAGCAACTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAGAGTAGAGGTAGAAAACGCAAGCGAAGGAAGCAGTCAAGAGCAGGGGCATCAGTTAGAAACACCAATCTTGGTGTAGAAGCAAACCCTTCTTCTGGGTCTGATAAAAAATTTGGATTCAATTCTGGACCAGACTTCACACTCAAGGAATTTCAGGCATATGCAGACTACTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCGAGAGGATTTAAATTTTGATATCGAATCTAGCCAGAGAAGGGAGCCTTCTGTGGAGGATATTGAGGGTGAATACTGGCGGATAGTTGAAAAGTCTACAGATGAGGTCGAGGTTTACTATGGAGCTGATATAGAATCAGGAACGTTCGCCAGTGGCTTTCCCAAGGCCTCATCGATGGTAACTGAAGGAATTTCAGATCCATATGTAAAGTCTGGTTGGAATCTGAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCTGGAGTTCTAGTTCCATGGCTGTATGTCGGAATGTTCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCTACGCACCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGACTTATTTGAAGAACACCCAGATTTACTTCATGACTTGGTCACTCAATTATCTCCTTCAATACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACCTTTCCCAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCCGAGGCTGTGAACGTGGCACCGGTGGACTGGTTGATTCATGGTCAAAATGCTATCGAACTTTATAGTGCACAACGACATAGGACATCGCTTTCACATGATAAATTGTTAATTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTTGAAAAGAGAACTCCAAGTAATCAGAGTTGGATAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTAAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGGTGCAAAAGATGGAAAACGAGATTGATTGCAAAAGCGAAAGAGAGTGTTACGCCTGCTTCTACGACTTATATCTCTCTTCAACTTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCCAGTAGACGACAGGTGTGTGCTCTTTCGCTACAGTATAAACGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCAAGATACTGTGAAATGGAAAACAACAATGGATCTGTAGCTAAGAAAAGGACGTTTGTAAAGCAGCACATGAAGAAAAAGATACCGCCAAGTTCTTGGAATTTGGTTCCTTTTGTTGAACCTACGAATATTGGAACAACTATGTTTGGAAAGCCTTGCACCGCCAGAAAGCCATATTTCCAAAAGGTTTTAGAAGCCGAGAGAAATTCTTTAGTGTGCTTAATCCAACTAATATTGTTACCTGCACGTCAGATGTTCTTGATGATGGCCTCCTGGGACCTCTATTCAAGGTGA 2037 42.17 MFTNNSEKDRSSKSSHKSVQIVEMLGSPQHLKISARWDPHEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRLQAEAYGICRIVPPPSWNPPCVLKEKCIWENDKFSTRIQQLDLLQNREPMKKKSRGRKRKRRKQSRAGASVRNTNLGVEANPSSGSDKKFGFNSGPDFTLKEFQAYADYFKECYFGIKQAREDLNFDIESSQRREPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFASGFPKASSMVTEGISDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMFFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSYAPSLEAAMKKHLPDLFEEHPDLLHDLVTQLSPSILKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAIELYSAQRHRTSLSHDKLLIGSAREAAQALWELLVLEKRTPSNQSWISVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKVQKMENEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCEMENNNGSVAKKRTFVKQHMKKKIPPSSWNLVPFVEPTNIGTTMFGKPCTARKPYFQKVLEAERNSLVCLIQLILLPARQMFLMMASWDLYSR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3631145 3636268 - Carg25399-RA Car18g00498 166200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00498 678 MobiDBLite consensus disorder prediction 122 138 - -
Car18g00498 678 MobiDBLite consensus disorder prediction 139 157 - -
Car18g00498 678 Pfam C5HC2 zinc finger 514 565 IPR004198 -
Car18g00498 678 ProSiteProfiles JmjN domain profile. 50 91 IPR003349 -
Car18g00498 678 MobiDBLite consensus disorder prediction 116 157 - -
Car18g00498 678 Pfam JmjC domain, hydroxylase 291 407 IPR003347 -
Car18g00498 678 ProSiteProfiles JmjC domain profile. 258 424 IPR003347 -
Car18g00498 678 Pfam jmjN domain 51 84 IPR003349 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00251 Car-Chr8:1593842 Car18g00498 Car-Chr18:3631145 1.91E-59 dispersed
Car15g01104 Car-Chr15:8682827 Car18g00498 Car-Chr18:3631145 4.78E-12 dispersed
Car18g00498 Car-Chr18:3631145 Car19g00173 Car-Chr19:1572092 5.32E-59 dispersed
Car13g00351 Car-Chr13:6133873 Car18g00498 Car-Chr18:3631145 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5163 PF02373 JmjC 1.80E-43 CL0029 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00498 - - cmax:111489928 1255.35