Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00498 ATGTTCACTAATAATAGTGAAAAGGATCGTTCTTCCAAGAGCAGTCATAAAAGTGTTCAGATTGTTGAGATGTTAGGGAGTCCTCAGCATCTGAAGATATCAGCTAGATGGGACCCGCATGAAGCGTGCAGGCCTTTAATTGACGAAGCACCTGTATTTTATCCAACCGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCTTCAAGCAGAAGCTTATGGTATATGCCGGATTGTCCCTCCGCCTTCTTGGAATCCACCATGCGTTCTCAAGGAGAAATGCATATGGGAAAATGACAAATTTTCTACTCGTATTCAGCAACTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAGAGTAGAGGTAGAAAACGCAAGCGAAGGAAGCAGTCAAGAGCAGGGGCATCAGTTAGAAACACCAATCTTGGTGTAGAAGCAAACCCTTCTTCTGGGTCTGATAAAAAATTTGGATTCAATTCTGGACCAGACTTCACACTCAAGGAATTTCAGGCATATGCAGACTACTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCGAGAGGATTTAAATTTTGATATCGAATCTAGCCAGAGAAGGGAGCCTTCTGTGGAGGATATTGAGGGTGAATACTGGCGGATAGTTGAAAAGTCTACAGATGAGGTCGAGGTTTACTATGGAGCTGATATAGAATCAGGAACGTTCGCCAGTGGCTTTCCCAAGGCCTCATCGATGGTAACTGAAGGAATTTCAGATCCATATGTAAAGTCTGGTTGGAATCTGAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCTGGAGTTCTAGTTCCATGGCTGTATGTCGGAATGTTCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCTACGCACCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGACTTATTTGAAGAACACCCAGATTTACTTCATGACTTGGTCACTCAATTATCTCCTTCAATACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACCTTTCCCAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCCGAGGCTGTGAACGTGGCACCGGTGGACTGGTTGATTCATGGTCAAAATGCTATCGAACTTTATAGTGCACAACGACATAGGACATCGCTTTCACATGATAAATTGTTAATTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTTGAAAAGAGAACTCCAAGTAATCAGAGTTGGATAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTAAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGGTGCAAAAGATGGAAAACGAGATTGATTGCAAAAGCGAAAGAGAGTGTTACGCCTGCTTCTACGACTTATATCTCTCTTCAACTTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCCAGTAGACGACAGGTGTGTGCTCTTTCGCTACAGTATAAACGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCAAGATACTGTGAAATGGAAAACAACAATGGATCTGTAGCTAAGAAAAGGACGTTTGTAAAGCAGCACATGAAGAAAAAGATACCGCCAAGTTCTTGGAATTTGGTTCCTTTTGTTGAACCTACGAATATTGGAACAACTATGTTTGGAAAGCCTTGCACCGCCAGAAAGCCATATTTCCAAAAGGTTTTAGAAGCCGAGAGAAATTCTTTAGTGTGCTTAATCCAACTAATATTGTTACCTGCACGTCAGATGTTCTTGATGATGGCCTCCTGGGACCTCTATTCAAGGTGA 2037 42.17 MFTNNSEKDRSSKSSHKSVQIVEMLGSPQHLKISARWDPHEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRLQAEAYGICRIVPPPSWNPPCVLKEKCIWENDKFSTRIQQLDLLQNREPMKKKSRGRKRKRRKQSRAGASVRNTNLGVEANPSSGSDKKFGFNSGPDFTLKEFQAYADYFKECYFGIKQAREDLNFDIESSQRREPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFASGFPKASSMVTEGISDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMFFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSYAPSLEAAMKKHLPDLFEEHPDLLHDLVTQLSPSILKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAIELYSAQRHRTSLSHDKLLIGSAREAAQALWELLVLEKRTPSNQSWISVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKVQKMENEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCEMENNNGSVAKKRTFVKQHMKKKIPPSSWNLVPFVEPTNIGTTMFGKPCTARKPYFQKVLEAERNSLVCLIQLILLPARQMFLMMASWDLYSR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3631145 3636268 - Carg25399-RA Car18g00498 166200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00498 678 MobiDBLite consensus disorder prediction 122 138 - -
Car18g00498 678 MobiDBLite consensus disorder prediction 139 157 - -
Car18g00498 678 Pfam C5HC2 zinc finger 514 565 IPR004198 -
Car18g00498 678 ProSiteProfiles JmjN domain profile. 50 91 IPR003349 -
Car18g00498 678 MobiDBLite consensus disorder prediction 116 157 - -
Car18g00498 678 Pfam JmjC domain, hydroxylase 291 407 IPR003347 -
Car18g00498 678 ProSiteProfiles JmjC domain profile. 258 424 IPR003347 -
Car18g00498 678 Pfam jmjN domain 51 84 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00498 - - - cmax:111489928 1255.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00251 Car-Chr8:1593842 Car18g00498 Car-Chr18:3631145 1.91E-59 dispersed
Car15g01104 Car-Chr15:8682827 Car18g00498 Car-Chr18:3631145 4.78E-12 dispersed
Car18g00498 Car-Chr18:3631145 Car19g00173 Car-Chr19:1572092 5.32E-59 dispersed
Car13g00351 Car-Chr13:6133873 Car18g00498 Car-Chr18:3631145 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00715 . 47 1234 JUMONJI Transcription Factor Family AT1G08620 53.7 0.0e+00 1213.0
Car18g00498 . 32 581 JUMONJI Transcription Factor Family AT1G08620 59.4 9.4e-189 658.3
Car18g00498 . 21 643 JUMONJI Transcription Factor Family AT1G30810 57.3 9.2e-204 707.6
Car18g00498 . 27 586 JUMONJI Transcription Factor Family AT2G34880 55.3 3.2e-177 619.4
Car18g00498 . 58 602 JUMONJI Transcription Factor Family AT4G20400 59.8 1.5e-194 677.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5163 PF02373 JmjC 1.80E-43 CL0029 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00498 Car_Chr18 FPKM 0.805907 0.598239 0.260099 0.603517 0.842528 0.685466 0.270781 0.532531 0.489162 0.640499