Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00525 ATGGCTTTCTGGGTGTTTTTCTTCTTGATCTTTGGTTCTGTTCCGCTTGTTCCTGCTCTTACTCTTGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCACAGCTGACTGGCTGGATTGGTAGTGGCGGTGATCCATGTGTTGAGTTATGGAAAGGGGTGTCATGTGAAGGCTCTGCTGTTGTCTCCATTGAGATTTCCGGGTTGGGGCTGAATGGCACGATGGGCTATGCGCTCTCGAGTCTTATTTCATTGAGAAATCTTGATATGAGCAACAACAATATTCACGACACGATTCCTTACCAACTACCGCCGAACCTCACGAGCCTCTCAGGCGATAGGAGACGTTTTCACGAATCTTACTTCCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACCGGGGATCTTCCGAATTCCTTGAGCTCATTGTCGAATATTTCTTCTCTAACAATCAATTGACTGGTTCTCTCAATAATCTTATCAGTTTGCCTCTAACGACGCTAAATGTAGCGAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATCGAAAATTTCATATACGATGGAAATTCATTCGACAACAGTCCTGCACCTCCTCCACCCCCTTTTACTCCACCTCCTCCCGGTAGATCTCGTGACAGCCCCCGACGCCCTGGGTCCGGTGGTGGCAACCACACTGCCTCAAGCTCTGATAGCAGTTCATCAAACTCGAAGAAAGGCTTGTCAGTTTTGGAAATAGTAGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTATGCATCCAGAAGAGAAAACGGAAGAACATCGGTCTACGAGCTTCGAGCGGAAGGCTGTCTATTGGCACTAGCGTGAATACGGAGGTGCACGAGCATCGGGTTAAAAGCGTTGCTGCTGTTGCAGATATTAAGCCACTTCCTGCGGAGAAAATGAATCCCGAGAGATTACAAGCGAAAAACGGATCGGTGAAAAGGATAAAGTCCCCTATTACTGCTACTTCTTACACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGTATAGTCGGTGAAGGCTCTCTCGGTCGTGTTTACAAAGCCGAGTTTCCAAACGGGAAGATAATGGCGATCAAGAAAATCGACAATGCGGCATTGTCGCTACAGGAAGAAGACAATTTTCTTGAAGCGGTCTCAAACATGTCAAGATTGAGGCACACGAATATTGTGACACTAAATGGTTATTGCGTCGAGCATGGTCAGCGTCTTCTCGTTTACGAGTTCATTGGAAATGGAAGTTTACACGACATGCTCCATTTTGCTGAAGATAGTAGCAAGACACTGACTTGGAACGCACGTGTCCGAGTAGCACTTGGAACAGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACAGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCTGATTCCGGTTTGGCTGCTTTAACGCCCAACACAGAGCGACAGGTTAACACTCTAGGATTCTTACTATTTCGAGCTCGTAAACGTGTTAACAAACGATTCTTGCAGGTTTCTACTCAGATGGTTGGTTCCTTTGGCTACAGTGCTCCGGAATTTGCCTTGTCGGGAATATACACCGTTAAAAGCGACGTGTACAGCTTTGGCGTGGTGATGTTGGAGCTGTTGACGGGACGAAAGCCGCTTGATAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAGAGGCATTCGAGCGACGAGTCGGGTTTCAGTTACAAAACACCAGACCACGATGCAGT 1872 45.51 MAFWVFFFLIFGSVPLVPALTLASDVQALQVIYTSLNSPPQLTGWIGSGGDPCVELWKGVSCEGSAVVSIEISGLGLNGTMGYALSSLISLRNLDMSNNNIHDTIPYQLPPNLTSLSGDRRRFHESYFPGDLGPFFQQLYRGSSEFLELIVEYFFSNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFDNSPAPPPPPFTPPPPGRSRDSPRRPGSGGGNHTASSSDSSSSNSKKGLSVLEIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNTEVHEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCVEHGQRLLVYEFIGNGSLHDMLHFAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDSGLAALTPNTERQVNTLGFLLFRARKRVNKRFLQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSTSIGAFSAKSECGKEAFERRVGFQLQNTRPRCS 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4125365 4130697 + Carg27279-RA Car18g00525 166227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00525 624 Pfam Protein kinase domain 366 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00525 624 MobiDBLite consensus disorder prediction 232 249 - -
Car18g00525 624 ProSiteProfiles Protein kinase domain profile. 364 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00525 624 MobiDBLite consensus disorder prediction 205 224 - -
Car18g00525 624 MobiDBLite consensus disorder prediction 201 249 - -
Car18g00525 624 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00525 Car-Chr18:4125365 Car19g00763 Car-Chr19:8416121 6.43E-06 dispersed
Car13g00311 Car-Chr13:5657182 Car18g00525 Car-Chr18:4125365 0 wgd
Car18g00525 Car-Chr18:4125365 Car04g01905 Car-Chr4:11251742 1.15E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89524 PF00069 Pkinase 7.60E-39 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00525 - - csv:101216091 816.609