Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00550 ATGCCCAGTGGTGAAGATTTAAGCAGGTGGAAGCCAGAGAGTGAATGTTGGGGGGAAATCATTAAGCTAACTTCGGAATTAATGAAGATCTTTGTTGATTTTGAGATGGAGTCTGGTGATGTTGAACAATCCTTGCTTCCCAAGCTGTCCGATTCCAAAAAGAGGAATTCTCTCCAGAGAAGAAAATCGATCCATCATGAAATTTTTTCACGTTCATTAGAACATAACAATCAACCACGAAACGGTGATGAAACGTCTCATCAACGTGTGATTGTTAAACAAGTTAGTTTTAGGAAAGTATTTGTTGTGCTGGCTATTTATTTGGGAGGAGGAACACTTTGTTTCTTCCTTGTTGGAGATCAAATCAATGGCAAGAAAACAAACGGGATTGTTGATGCCATTTACTTTTGTGTGGTGACAATGACCACTGTTGGGTATGGTGATCTTGTTCCTAATAGCATTGGTGCAAAACTACTTGCTTGTGCTTATGTCTTCACTGGAATTACTCTTGGTGGGATGCTTCTTAGCAGGGCGGCCGATTACATTGTTGAAAAGCAGGAAATTCATCTGGTTAAGGCCATTTTCATGAGCAAAAAGATCAGCTCCGGTGAGCTCCTTCGAGAGTCTGTGGCACACAAACTCAAATACAAAATCATTATGACTGGAATCGTCCTTTGGGTTCTCGTTGTTGTCGGTACTCTTTTCTTGATTCTGGTTGAGAAGTTTGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACAACTCTTGGCTATGGGGACAAGAGCTTCTCTACAACAACTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTAGCACAGTTCTTTCTGTACCTCGCCGAATTACGCGCCGAGAGGAGACAGAAATCACTAGTGAATAGGGTTCTCTCCCGAGATCTCACTTTCTCTGATCTCGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCTGAATTTGTTGTATATAAACTGAAGGAAATGGGAAAGATCAATCAGGAAGATATTTCTCCAATACTTGACACTTTTTATAAGCTTGACATTGATCAATCAGGAAACTTAACAGAAGCTGATTTAGTAACTTCATAG 1131 40.41 MPSGEDLSRWKPESECWGEIIKLTSELMKIFVDFEMESGDVEQSLLPKLSDSKKRNSLQRRKSIHHEIFSRSLEHNNQPRNGDETSHQRVIVKQVSFRKVFVVLAIYLGGGTLCFFLVGDQINGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIGAKLLACAYVFTGITLGGMLLSRAADYIVEKQEIHLVKAIFMSKKISSGELLRESVAHKLKYKIIMTGIVLWVLVVVGTLFLILVEKFEFTDAFYCVCSTITTLGYGDKSFSTTTGRVFAVIWIMSSTICLAQFFLYLAELRAERRQKSLVNRVLSRDLTFSDLEEADLDHDKVVSAAEFVVYKLKEMGKINQEDISPILDTFYKLDIDQSGNLTEADLVTS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5182713 5184844 + Carg25600-RA Car18g00550 166252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00550 376 Pfam Ion channel 103 183 IPR013099 -
Car18g00550 376 Pfam Ion channel 224 294 IPR013099 -
Car18g00550 376 ProSitePatterns EF-hand calcium-binding domain. 322 334 IPR018247 -
Car18g00550 376 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01237 Car-Chr3:9568600 Car18g00550 Car-Chr18:5182713 3.79E-64 dispersed
Car07g00111 Car-Chr7:713617 Car18g00550 Car-Chr18:5182713 7.40E-64 dispersed
Car09g00916 Car-Chr9:5642024 Car18g00550 Car-Chr18:5182713 3.56E-118 dispersed
Car18g00550 Car-Chr18:5182713 Car01g00954 Car-Chr1:9161999 8.44E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00550 K05389 - csv:101214791 538.11