Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00572 ATGACGAGAAAGAAGGTGAAACTGACATTCATCACAAACGACGCAGCCAGAAAAGCCACATTCAAGAAGAGGAAAAAGGGTTTCTTAAAGAAGCTCACTGAGCTCACTACCCTCTGTGGGATCGACGCCTGCGCCATTATCTTCAGCCCCTTCAATTCCTACCCTGATCTATGGCCATCCCTTGTGGGCGTCCAGAGGGTTATCTCCCACTTCAAGGCCCTGCCCGAGATGGAGCAGTGCAAGAAGATGGTGAACCAAGAGACCTTCCTCCGCCACCGCATTGCCAAGGCTGCCGACCAGCTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATCGCCCATGTCATGTTTCAGACCCTTGTCGCCGGAGGGGCTCCACGGCCTACTTTGAATGTCATTGATTTGAATGATCTTGGGTGGCTGGTTGATCAGAAGATGGCGGATATTTGCAAAAGGATTGAGCTTCTTAGGTCGGCGGTGGCTGTGGAACAGAACCAACCACCGTGTGTGGCGACGGTGGAGCCGTCATGGTTTATAGAGATGGTGAATCAAGAATGTGATGATCAAATGAGATTCAATATTGGGGATGATGTCATTCAGCTTCCTACTTTTGGGGAGGATGGTTGGCCAAATAATGCATTTTTCCCTTGA 654 50.15 MTRKKVKLTFITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPFNSYPDLWPSLVGVQRVISHFKALPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEIAHVMFQTLVAGGAPRPTLNVIDLNDLGWLVDQKMADICKRIELLRSAVAVEQNQPPCVATVEPSWFIEMVNQECDDQMRFNIGDDVIQLPTFGEDGWPNNAFFP 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6171828 6172481 + Carg28103-RA Car18g00572 166274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00572 217 Coils Coil 87 114 - -
Car18g00572 217 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car18g00572 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00572 - - - csv:101219796 295.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01007 Car-Chr11:7011197 Car18g00572 Car-Chr18:6171828 5.45E-64 dispersed
Car18g00572 Car-Chr18:6171828 Car20g00916 Car-Chr20:9941111 2.92E-11 dispersed
Car13g00298 Car-Chr13:5438566 Car18g00572 Car-Chr18:6171828 1.54E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
Car04g00399 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Car10g01041 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.6e-53 204.9
Car11g01007 . 1 154 Type I MADS-box Gene Family AT5G48670 61.0 5.6e-48 188.7
Car18g00572 . 1 184 Type I MADS-box Gene Family AT5G48670 53.3 1.6e-47 187.2
Car13g00298 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 1.7e-44 177.2
Car04g00399 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Car16g00706 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.1e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5169 PF00319 SRF-TF 3.50E-16 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00572 Car_Chr18 FPKM 36.310135 39.94006 46.952541 44.392059 22.921848 26.057823 21.905016 95.747444 93.911987 82.269424