Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00572 ATGACGAGAAAGAAGGTGAAACTGACATTCATCACAAACGACGCAGCCAGAAAAGCCACATTCAAGAAGAGGAAAAAGGGTTTCTTAAAGAAGCTCACTGAGCTCACTACCCTCTGTGGGATCGACGCCTGCGCCATTATCTTCAGCCCCTTCAATTCCTACCCTGATCTATGGCCATCCCTTGTGGGCGTCCAGAGGGTTATCTCCCACTTCAAGGCCCTGCCCGAGATGGAGCAGTGCAAGAAGATGGTGAACCAAGAGACCTTCCTCCGCCACCGCATTGCCAAGGCTGCCGACCAGCTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATCGCCCATGTCATGTTTCAGACCCTTGTCGCCGGAGGGGCTCCACGGCCTACTTTGAATGTCATTGATTTGAATGATCTTGGGTGGCTGGTTGATCAGAAGATGGCGGATATTTGCAAAAGGATTGAGCTTCTTAGGTCGGCGGTGGCTGTGGAACAGAACCAACCACCGTGTGTGGCGACGGTGGAGCCGTCATGGTTTATAGAGATGGTGAATCAAGAATGTGATGATCAAATGAGATTCAATATTGGGGATGATGTCATTCAGCTTCCTACTTTTGGGGAGGATGGTTGGCCAAATAATGCATTTTTCCCTTGA 654 50.15 MTRKKVKLTFITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPFNSYPDLWPSLVGVQRVISHFKALPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEIAHVMFQTLVAGGAPRPTLNVIDLNDLGWLVDQKMADICKRIELLRSAVAVEQNQPPCVATVEPSWFIEMVNQECDDQMRFNIGDDVIQLPTFGEDGWPNNAFFP 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6171828 6172481 + Carg28103-RA Car18g00572 166274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00572 217 Coils Coil 87 114 - -
Car18g00572 217 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car18g00572 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01007 Car-Chr11:7011197 Car18g00572 Car-Chr18:6171828 5.45E-64 dispersed
Car18g00572 Car-Chr18:6171828 Car20g00916 Car-Chr20:9941111 2.92E-11 dispersed
Car13g00298 Car-Chr13:5438566 Car18g00572 Car-Chr18:6171828 1.54E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5169 PF00319 SRF-TF 3.50E-16 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00572 - - csv:101219796 295.434