Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00579 ATGGCCTCAAAGACGAGTTTGAAACCTTCTGCAAAGCAAACTAAGGGGATAACCACTGTTAAATCGACTGATGCTAGTGATCTTAAATCCTTACCTTCAGTTGTTTCTGGAGATGTATCAAACTCAACACACAGATTCTTGAATCATTCTGCTTTGATTGATTCATCGAAAACCAAATCCTCTACTTTGAATCCTAAAGGATCTACTGAGTCTTGTAATCAGGAAGTCAATGAAAATTCCTTGAACTATATAGATCTTGAGAAGAAAACATCTGAATGTGGGAGTGGGAAGGATAGTTCTGCTTCTGCCAAAGTCAATGATGGAACAAACAGTCTTGCCAAGACTAGTGGGAGCGCGAAAGTTAGTGACCGTGTTGAGATGGTCGAAAGTGGCAAGAGTAGTATATGTCGAGGAAGTACGAGTAGCGATATCAGTGATGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGCAAGCCTCACAAATCAAATGACTTGAGATGGGAGGCTATCCAAGCTGTACGTGCAAGGGATGGGATGTTGGGATTAGGCCATTTTAGACTATTGAAGAGACTGGGTTGTGGCGATATCGGAAGTGTCTACTTGTCGGAATTGAGTGGCACTAAGTGTTATTTTGCAATGAAGGTTATGGACAAAGGGTCTCTGGCTAGTCGGAAGAAGTTGCTTCGTGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTGTATACACATTTTGAGACTGACAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTACACACTCTAAGGCAGAGACAGCCGGGGAAGTATTTTCCCGAACAAGCGGTGAAATTTTACGTAGCGGAGGTCCTCCTAGCACTCGAGTATCTTCACATGCTTGGGATTGTATATCGGGACCTTAAGCCCGAGAATGTTCTTGTGAGGGAAGACGGACACATTATGCTTTCAGACTTCGATCTTTCCCTAAGATGTGCTGTTAGTCCAACATTAGTGAAGGGCTCATGTTCTGAGTCCGAACCCTTACGAAAGAATTCAGCTTACTGTGCCCAGCCAGCTTGTATCGAGCCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACGTCGTGTTTTACTCCCCGACTTTTCTCTAGCAAGTCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGTAACCAGGTAACACCATTGCCAGAGCTGATTGCAGAGCCGACGGAGGCGAGGTCAATGTCATTTGTTGGTACACATGAGTACTTGGCACCCGAGATCATTAAAGGCGAAGGTCACGGAAGTGCTGTCGACTGGTGGACTTTTGGAATCTTCCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAAGGATCTGGGAATCGGGCGACGTTGTTCAACGTCGTTGGTCAGCCATTGCGGTTTCCAGAATCCCCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTCGTCAAGGAACCACAGCATAGGTTAGCTTACAAAAGAGGGGCAACTGAGATCAAGCAACACCCGTTCTTTGAAGGTGTTAACTGGGCGTTGATACGATGTGCTTCGCCACCAGACGTACCGAAGCCTGTTGAGATCGAGAGGATACCATCACCAGCACCTCCAGTCAGTGGAAAAGCAGTGATGGCTACCAGACCTGCTCCTGATTCCAAATCATCTGATAACTATCTCGAGTTTGATTTCTTTTAG 1746 45.42 MASKTSLKPSAKQTKGITTVKSTDASDLKSLPSVVSGDVSNSTHRFLNHSALIDSSKTKSSTLNPKGSTESCNQEVNENSLNYIDLEKKTSECGSGKDSSASAKVNDGTNSLAKTSGSAKVSDRVEMVESGKSSICRGSTSSDISDESTCSSFSSSISKPHKSNDLRWEAIQAVRARDGMLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKYFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSAYCAQPACIEPSCIQPSCVVPTSCFTPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPDVPKPVEIERIPSPAPPVSGKAVMATRPAPDSKSSDNYLEFDFF 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6510796 6512829 - Carg27222-RA Car18g00579 166281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00579 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Car18g00579 581 Pfam Protein kinase domain 420 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00579 581 Pfam Protein kinase domain 187 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00579 581 MobiDBLite consensus disorder prediction 95 118 - -
Car18g00579 581 MobiDBLite consensus disorder prediction 548 574 - -
Car18g00579 581 MobiDBLite consensus disorder prediction 1 41 - -
Car18g00579 581 ProSiteProfiles Protein kinase domain profile. 186 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00579 581 MobiDBLite consensus disorder prediction 92 121 - -
Car18g00579 581 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00095 Car-Chr3:1208342 Car18g00579 Car-Chr18:6510796 0 dispersed
Car03g00558 Car-Chr3:5394291 Car18g00579 Car-Chr18:6510796 5.13E-151 dispersed
Car03g01056 Car-Chr3:8614273 Car18g00579 Car-Chr18:6510796 0 dispersed
Car07g00311 Car-Chr7:1591049 Car18g00579 Car-Chr18:6510796 0 dispersed
Car07g01241 Car-Chr7:7661019 Car18g00579 Car-Chr18:6510796 0 dispersed
Car11g01352 Car-Chr11:11072588 Car18g00579 Car-Chr18:6510796 0 dispersed
Car12g00608 Car-Chr12:4137217 Car18g00579 Car-Chr18:6510796 0 dispersed
Car13g00395 Car-Chr13:6510943 Car18g00579 Car-Chr18:6510796 1.17E-136 dispersed
Car14g00612 Car-Chr14:3439977 Car18g00579 Car-Chr18:6510796 0 dispersed
Car16g00420 Car-Chr16:2621183 Car18g00579 Car-Chr18:6510796 8.49E-113 dispersed
Car18g00466 Car-Chr18:3054095 Car18g00579 Car-Chr18:6510796 1.00E-136 dispersed
Car18g00579 Car-Chr18:6510796 Car20g00154 Car-Chr20:868294 0 dispersed
Car13g00238 Car-Chr13:4356017 Car18g00579 Car-Chr18:6510796 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89525 PF00069 Pkinase 1.00E-36 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00579 K08286 - csv:101213662 1021.15