Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00615 ATGGCCACTCCGCCGCTCCACGCCACCGCCTTATCTAACTCTTCACCTTACTCAAATCTCTACGGAATCCATCACAACCCTTCCCCTCCTCCTTTTCTGAATCAAGAACACCCAGCTTTTGATTTTGGAGAGCTTGAAGAAGCCATCGTTTTGCAAGGAGTTAAGCTCGGAAATGATGAACCCAAATCGCCACATTTTGTTTCAGGGAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACAATGGGAGAAGGTTCAAAGTCAGAGAGCACTGATTCAGGTTCAGCGAACATAAACAACGCTCTCACAAGCAAAACAGAGTTGGAAATGGAATCTGATTCGCCGATTAGCAGAAGGCTCTGTTCTTCAGCTCAAGGATTTGACCAAGTTCTTCATCATCATCATCATCATCATCATCATCTTCAAACAGAGCTTGAAGATGATGCCTTGAGAATAGACCCATCATCGCACCATAATCAATCCCCTGTGGAAGGAAAGAGAAAAGGAGGTGGTTCAACATCAGAGAGGCAGCTTGATCCAAAGACACTGAGACGTTTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAACTAGAGTCCAGTAGAATGAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGTTCTCAGGGATTGTTTCTAGGAGCTTGTGGCGGCGTTAACTCATTAAGGGGAGCTGCAATATTTGACATGGAGTATGCACGGTGGCTAGACGACGACCACCGTCTAATGGCAGAGCTGCGGGCGGCGCTGCATGGATATCTCCCGGACGGCGACCTTCAAGCAATAGTAGACAATTACATCTCCCACTACGACGAAATCTTTCACCTGAAAAGTGTGGCGGCGAAATCCGACGTGTTTCATTTGATTACCGGAATGTGGATGACGCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGACCATCTAAGCTGATAGAGATGCTAATTCCGCAATTAGAAACATTAACAGATCAACAAGCTGTGGAAATCTGTAGTTTACAAAGATCTTCACAAGAAACAGAGGATGCTCTGTATCAAGGGCTCGAACAGCTCCAACATTCTCTCATACGTGCCATCGCCGGTACCGCCGTTGTCGATGGTATCAACCATATGGCCGCTGCCGCGGGCCAACTCTCCAATCTCGAAGGCTTCATCCGTCAGGCTGATATGTTGAGACAACAAACGCTTCATCAAGTACGTCGAATTCTGACAATTCGACAAGCCGCACGATGTTTCGTCGTGATTGGAGAATACTACGAAAGACTTCGAGCTCTTAGTTCTTTGTGGGAATTGCATGAACGAGGAGAACTCGTGCCAAACAACGACCGAGCTACAAATGATTCAGAATTCGCACCACCATTTCCCGAACTTTTGATGAAATATTATAAAGCCTAA 1479 46.99 MATPPLHATALSNSSPYSNLYGIHHNPSPPPFLNQEHPAFDFGELEEAIVLQGVKLGNDEPKSPHFVSGRPAATLEMFPSWPIRFQQTPTMGEGSKSESTDSGSANINNALTSKTELEMESDSPISRRLCSSAQGFDQVLHHHHHHHHHLQTELEDDALRIDPSSHHNQSPVEGKRKGGGSTSERQLDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRMKLSQLEQDLHRARSQGLFLGACGGVNSLRGAAIFDMEYARWLDDDHRLMAELRAALHGYLPDGDLQAIVDNYISHYDEIFHLKSVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLETLTDQQAVEICSLQRSSQETEDALYQGLEQLQHSLIRAIAGTAVVDGINHMAAAAGQLSNLEGFIRQADMLRQQTLHQVRRILTIRQAARCFVVIGEYYERLRALSSLWELHERGELVPNNDRATNDSEFAPPFPELLMKYYKA 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7367620 7371390 - Carg26276-RA Car18g00615 166317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00615 492 Pfam bZIP transcription factor 190 231 IPR004827 GO:0003700|GO:0006355
Car18g00615 492 Coils Coil 209 236 - -
Car18g00615 492 Pfam Seed dormancy control 270 344 IPR025422 GO:0006351|GO:0043565
Car18g00615 492 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Car18g00615 492 MobiDBLite consensus disorder prediction 161 193 - -
Car18g00615 492 ProSiteProfiles DOG1 domain profile. 252 460 IPR025422 GO:0006351|GO:0043565
Car18g00615 492 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 232 IPR004827 GO:0003700|GO:0006355
Car18g00615 492 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00231 Car-Chr13:4225480 Car18g00615 Car-Chr18:7367620 5.56E-179 dispersed
Car15g00850 Car-Chr15:4944132 Car18g00615 Car-Chr18:7367620 1.91E-106 dispersed
Car18g00615 Car-Chr18:7367620 Car20g00148 Car-Chr20:809734 7.96E-127 dispersed
Car18g00615 Car-Chr18:7367620 Car06g00074 Car-Chr6:464387 1.86E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5172 PF14144 DOG1 2.50E-30 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00615 K14431 - csv:101204604 733.791