Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00645 ATGAGAACTCGAACAGGCCTCTGTTACCCTCGACTTGAAACCACCCTCTGCTCCGACACCCGTCATCGCAAAAGAACTCACGATGTCGCCGCCGACCGCCGCCGCCATTTTTGTCGGAAAAGAACCAAGCTCTCTCCACAAATTACTCCGCCGCCGCCTTCCGATTTCTTTGATTTCTTGCCTGACGACCTCGTCATTTCGATTCTCTCTAAACTCAGCTCCGCCGCCTCTTCCCCCTCCGATTTCATCAATATCTTGCTAACATGCAAAAGATTAAATAATTTAGGACTTATTCCCATGGTGTTATCCAAAGCTTCCCAGAAGACGTTTGCAATTAAGGCACGGAATTGGTCGGAATCCGCTCATCGGTTTCTTAAACGGTGTTCCGACGCTGGAAATGTTGATGCCAGTTATACCCTCGGCATGATTCGTTTCTACTGTTTGCAAAACAGAGGAAGTGGAGCTTCGCTGATGGCTAAGGCGGCGATTTGTTCCCACGCGCCGGCGCTTTACTCACTCGCTGTCATTCAGTTCAACGGCAGCGGTGGTTCCAAAAGCGATAAGGATCTCCGTGCCGGAGTTGCTTTATGCGCACGTGCTGCTTTTCTCGGTCACATCGACGCGCTGAGAGAACTCGGGCATTGTCTTCAAGACGGTTACGGCGTTCGTCAAAATATAACAGAGGGTCGTCGGTTTCTTGTCCAGGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCGTCGGAGGCGGGTTCTTCGGTTATTGCATCACGGTGTTGTGTTACGTGGAACCCTCACGTTCCACACCGGCACGTGACGGGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCGGCGCCGGAAGCGCATCCGGTGAGTCGGTTTATGGCGGAGTGGTTTGGGGCACGTGGGGAGTCGCCGGGGGTTGGGCTGAGGATGTGTTCGCACGTTGGATGTGGACGGCCGGAAACGAGACAGCATGAGTTCCGTCGATGTTCTGTTTGTGGCTCTGTAAATTACTGCTCACGTGCGTGTCAGGCGCTGGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTTGAACGTTGGGTTGATGATAACGGCGACGGTGGGGCCGATGATATCATGGCCGAAAGTTAA 1149 53.44 MRTRTGLCYPRLETTLCSDTRHRKRTHDVAADRRRHFCRKRTKLSPQITPPPPSDFFDFLPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPMVLSKASQKTFAIKARNWSESAHRFLKRCSDAGNVDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAGSSVIASRCCVTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAEWFGARGESPGVGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDCAPVERWVDDNGDGGADDIMAES 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7728719 7730227 + Carg21228-RA Car18g00645 166347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00645 382 ProSiteProfiles Zinc finger MYND-type profile. 318 360 IPR002893 -
Car18g00645 382 Pfam MYND finger 321 360 IPR002893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00645 - - - csv:101213808 627.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00049 Car-Chr10:217509 Car18g00645 Car-Chr18:7728719 3.83E-148 dispersed
Car13g00652 Car-Chr13:8072747 Car18g00645 Car-Chr18:7728719 2.82E-142 dispersed
Car18g00229 Car-Chr18:1312292 Car18g00645 Car-Chr18:7728719 2.68E-139 dispersed
Car18g00645 Car-Chr18:7728719 Car04g01388 Car-Chr4:8045853 1.11E-06 dispersed
Car03g01250 Car-Chr3:9650948 Car18g00645 Car-Chr18:7728719 0 transposed
Car12g00076 Car-Chr12:327283 Car18g00645 Car-Chr18:7728719 7.05E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00645 Car_Chr18 FPKM 23.029715 28.182127 20.106409 19.723917 20.780329 19.615456 21.772589 16.513783 14.509078 16.587357