Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00653 ATGATGAAGAAGACTCTGTTGTTTCTCCTCTTCATTTTTCACTTTCATGTCTCGTGCAAGGTTTTAGCCCTTTCGCCGGACGGTCTCTCGCTTCTTTCTCTCAAGTCGGCGGTCGATCAGTCGCCTGATTCATCTATTTTCTCTGATTGGAACGAGAATGACTCCACGCCTTGCCGATGGTCTGGCATTTCTTGCATGAATGTTTCCGGTGATTCGCGTGTGGTTGGGATTGCTCTCTCTGGTAAGAATCTCCATGGCTATATTCCTTCTGAGCTTGGTTCGCTTGTTTATCTCCGGCGATTGAACCTCCATAACAATAATTTTTACGGCTCGATACCGGAGCAGTTGTTTAATGCTACCTCTTTGCATAGCTTATTTCTCTATAGTAATAATCTCTCTGGTCCTTTTCCCCCTTCGATCTGCAACATTCCGAGGCTTCAAAACCTCGATCTCTCTAACAATTCTTTCGCTGGACCAATCCCCGACGAATTGAAGAATTGCAAGCAATTGCAGCGTTTGATACTCGCTAGAAATCAATTTGAAGGAGAAATTCCTTCTGGTGTGTGGTCCGAGATGGATAATTTACATCAACTCGACCTCTCATCCAACGATTTCAGTGGACCGATTCCGGAGGATTTGGGGGAACTGACGACACTTTCCGGTACGCTCAACCTGTCCTTCAATCATTTATCGGGAAAAATTCCGAAGACGCTAGGAGATTTGCCGGTGACGGTGAGTTTCGACCTCCGGAGCAACAATTTGAGTGGAAGCATACCTCAGACTGGTTCTTTTGCAAATCAGGGACCAACTGCATTTCTCAACAATCCTAAGTTGTGCGGATTTCCTCTTCAGAAATCCTGTGGGAGTTCAGAGCGTGGCTCACCGGGAAATCAGGCTTCTAGGCCTTCGTACAATGCCCCTGGAAAAGGCTTGGGCGCCGGATTAATCATTCTCATCTCTGCCGCCGATGCCGCCGGAGTGGCGTTTATCGGCCTGGTAATAGTATACATATATTGGCGAAGTAAAGACAATCCGAACGGCTGTAGCTGTACGTCCAAAGGAAAACTCGGAGGGAACCAGAAAAACGATCTATGCAATTTTCCTTGTATGAATGGACATGATAAGAACGAGGAGTCCGAAATGGAGGAACAGGAGAACAGTGGCGGAAACAGAGAAGAAGGAGGGCTTGTGGCCATAGACAAAGGCTTTACGTTCGAGCTGGACGAGCTGCTGAGAGCATCGGCCTATGTGCTGGGAAAGAGTGGATTGGGGATTGTGTACAAAGTGGTGCTCGGAAATGGGATTCCGGTGGCCGTACGGCGGCTGGGCGAAGGCGGAGAACAGAGGTATAAGGAGTTCGCGGCGGAGGTGCAGGCCATTGGAAGGGTAAAACATCCCAATATTGTGAAACTGAGAGCTTATTACTGGGCGCCAGATGAGAAGCTCTTGATCAGTGATTTTATCTCCAATGGAAACTTGGCCTCTGCACTTCGCGGGAGAAACGGGCAGCCATCTTCAACCCTTTCATGGTCAACCAGACTACGAATTGGCAAGGGAACTGCAAGGGGGTTGGCCTATCTCCACGAGTGCAGCCCAAGAAAGTTCGTCCATGGCGACATCAAGCCCTCCAACATCCTCCTCGACAACGAATTCCGCCCCCACATCTCCGACTTCGGCCTCAACAGGTTGATCACCATCACCGGCAACAATCCCTCCTCCTCTGGCGGCCTCATCGGCGGCGCCTTCTCCTATCTCAAATCCGCCCCAACCGACCGCAACAACAACTACTGCGCTCCGGAGGCTCGAGCTCCCGGCGCCCGCCCTACCCAAAAATGGGACGTCTATTCCTTCGGTGTCATGGTCCTCGAATTGCTCACCGGAAAGCCGCCGGAGCTTTCTCCGAACGGGTCGAGTTCTTTGGAGATTCCGGATTTGGTGAGGTGGGTCAGGCAAGGGTTTGAAGAAGCTAAGCCGTTGTCGGATTTGGTTGACCCTTCTCTTCTACAAGAAGTACATGCCAAGAAAGAGGTGCTTGCTGTATTCCACGTGGCGCTCGCCTGTACAGAGAGTGACCCGGAAGTTCGGCCCAGAATGAAAACGGTGTCGGAGAGTTTCGACAGGATTGGATGA 2130 50.47 MMKKTLLFLLFIFHFHVSCKVLALSPDGLSLLSLKSAVDQSPDSSIFSDWNENDSTPCRWSGISCMNVSGDSRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNFYGSIPEQLFNATSLHSLFLYSNNLSGPFPPSICNIPRLQNLDLSNNSFAGPIPDELKNCKQLQRLILARNQFEGEIPSGVWSEMDNLHQLDLSSNDFSGPIPEDLGELTTLSGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPKLCGFPLQKSCGSSERGSPGNQASRPSYNAPGKGLGAGLIILISAADAAGVAFIGLVIVYIYWRSKDNPNGCSCTSKGKLGGNQKNDLCNFPCMNGHDKNEESEMEEQENSGGNREEGGLVAIDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGRNGQPSSTLSWSTRLRIGKGTARGLAYLHECSPRKFVHGDIKPSNILLDNEFRPHISDFGLNRLITITGNNPSSSGGLIGGAFSYLKSAPTDRNNNYCAPEARAPGARPTQKWDVYSFGVMVLELLTGKPPELSPNGSSSLEIPDLVRWVRQGFEEAKPLSDLVDPSLLQEVHAKKEVLAVFHVALACTESDPEVRPRMKTVSESFDRIG 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7798146 7802196 - Carg21236-RA Car18g00653 166355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00653 709 Pfam Protein kinase domain 417 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00653 709 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Car18g00653 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Car18g00653 709 Pfam Leucine rich repeat 98 155 IPR001611 GO:0005515
Car18g00653 709 ProSiteProfiles Protein kinase domain profile. 412 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01838 Car18g00653 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02015 Car-Chr4:15963145 Car18g00653 Car-Chr18:7798146 4.88E-23 dispersed
Car07g01258 Car-Chr7:7806626 Car18g00653 Car-Chr18:7798146 3.71E-172 dispersed
Car15g00063 Car-Chr15:420303 Car18g00653 Car-Chr18:7798146 5.88E-125 dispersed
Car18g00653 Car-Chr18:7798146 Car18g00920 Car-Chr18:9971576 0 dispersed
Car18g00653 Car-Chr18:7798146 Car04g01838 Car-Chr4:10650596 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89527 PF00069 Pkinase 1.10E-30 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00653 - - cmax:111466327 1362.82