Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00654 ATGAAGCTGGATACTAGCGGTCTTGAATCGGCCACTTATTTCTCTGGTTTGAGTAGTACTGGGCTACTCGATGGGTTATCGACCGTGCCATCGTTCGATGTTCCAAATGCTGCTAATTTTGATGGATTTCAGAAAGACGCTATTCAGATGGTGAAGCCAGCAAAGGGAACGACAACTCTGGCCTTCATTTTCAAGGAAGGAGTCATGGTTGCTGCAGATTCCCGAGCGAGCATGGGAGGATATATATCGTCTCAATCTGTGAAGAAGATCATTGAAATAAATCCATACATGCTTGGTACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATCTTGGCATTAAGTGTCGGCTACATGAGTTGGCAAACAAGCGCAGAATTTCAGTGACGGGTGCATCCAAGTTGCTAGCTAACATTCTGTATTCCTACCGAGGAATGGGTCTTTCAGTTGGCACCATGATTGCTGGATGGGATGAAACTGGTCCTGGATTGTATTATGTTGACAGCGAAGGAGGAAGATTAAAAGGAACTCGATTTTCAGTTGGATCTGGTTCGCCTTATGCTTATGGCGTCCTGGACAACGGCTATCGGTACGATCTATCAATCGAAGAAGCTGCCGAATTGGCTAGAAGAGCAATTTATCACGCAACGTTCCGAGACGGAGCAAGTGGTGGAGTTGCTAGTGTTTATTATGTTGGACCAAATGGATGGAAGAAGCTATCTGGTGATGATGTTGGAGAACTTCACTTCAAATATTACCCGGTTGTGGCTGATACGGTCGAACAGGAAATGGTTGAAATCGCTGGATAG 819 45.54 MKLDTSGLESATYFSGLSSTGLLDGLSTVPSFDVPNAANFDGFQKDAIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDNGYRYDLSIEEAAELARRAIYHATFRDGASGGVASVYYVGPNGWKKLSGDDVGELHFKYYPVVADTVEQEMVEIAG 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7805671 7809961 - Carg21237-RA Car18g00654 166356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00654 272 ProSitePatterns Proteasome beta-type subunits signature. 60 107 IPR016050 GO:0005839|GO:0051603
Car18g00654 272 ProSiteProfiles Proteasome beta-type subunit profile. 56 235 IPR023333 -
Car18g00654 272 Pfam Proteasome subunit 55 235 IPR001353 GO:0005839|GO:0051603
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00654 K02737 PSMB5; 20S proteasome subunit beta 5 [EC:3.4.25.1] - csv:101210332 489.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00621 Car-Chr14:3485438 Car18g00654 Car-Chr18:7805671 2.05E-19 dispersed
Car18g00654 Car-Chr18:7805671 Car13g00322 Car-Chr13:5753399 4.85E-14 dispersed
Car12g00063 Car-Chr12:264905 Car18g00654 Car-Chr18:7805671 6.81E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1185 Blo01g00364 Blo16g01195 Bda01g02184 . Bpe13g00527 . . . . Cmo18g00697 . Cma18g00708 . Car18g00654 . Cpe09g00580 . . . . . . . . . . . . . . . . . Cone8ag0741 . . . . Cme10g00645 . . . . . . Bma01g00017 . . . . . . . . . . . . . . . . . Cla11g01353 Cam11g1411 Cec11g1437 Cco11g1432 Clacu11g1568 Cmu11g1388 Cre11g1809 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002048 5 2 1 1 1 2 3 1 2 2 2 2 3 1 2 3 1 2 3 1 2 1 1 2 2 1 2 6 8 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00654 Car_Chr18 FPKM 5.399113 6.484812 8.911655 7.74649 6.115412 3.631283 10.299237 9.18516 9.703294 15.389867