Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00656 ATGAAGAGGCGATTGGACACCGAGCGGTTTATTGAAGGTGACTTTGGCCAGTATGTTAGATGCATGCGCCAACCACACGTTTGGGGAGGAGAACCTGAGTTACTTATGTCTTCACACGTCCTACGGATGCCAATCTCGGTCTACATTTGGGACATGAAGTCAGCAAATCTGAAGCTCATAGCTGAGTATGGGCAGGAGTACAGTAAAGAGAATCCTATTCGCGTCCTTTTTCACAGCTATGGACATTATGATTTACTGAAGGCTCCATGA 270 46.3 MKRRLDTERFIEGDFGQYVRCMRQPHVWGGEPELLMSSHVLRMPISVYIWDMKSANLKLIAEYGQEYSKENPIRVLFHSYGHYDLLKAP 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7823182 7826244 + Carg21239-RA Car18g00656 166358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00656 89 Pfam OTU-like cysteine protease 4 83 IPR003323 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00656 K18342 OTUD6; OTU domain-containing protein 6 [EC:3.4.19.12] - csv:101209836 169.088
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00656 Car-Chr18:7823182 Car18g00850 Car-Chr18:9472735 1.89E-33 dispersed
Car18g00656 Car-Chr18:7823182 Car14g00402 Car-Chr14:2025593 8.47E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1176 . . . . . . . . . Cmo18g00699 . Cma18g00711 . Car18g00656 . Cpe09g00578 . Bhi07g01897 . . . Hepe10g1531 . . . . . . . . . . . Cone8ag0739 . Lsi04g00664 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01356 . Cec11g1440 . Clacu11g1571 Cmu11g1391 Cre11g1812 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000657 2 7 1 4 3 2 4 2 3 3 3 3 3 3 3 4 3 4 4 3 3 3 2 2 2 3 2 8 5 3 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00656 Car_Chr18 FPKM 25.908417 23.831303 17.339615 18.167515 7.126328 7.924046 7.207861 56.184166 52.519955 55.965874