Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00657 ATGGGCAGTATCGACACGGTGACGAAGAACATCATGAAATTGAGTCCGAGAGAAGTGGAAAAGCTAGGTTTACATAATGCGGGATTTCTAGCGCAGAAGCGTCTTGCTCGTGGCGTGAGATTGAATTACGCTGAAGCTGTAGCACTAATTGCCGCACAGATTTTGGAGTTTGTTCGTAATGGCGAGAAGAGCGTGGCGGATCTTATGGATTTGGGGAAAACATTGTTAGGAAGGTTTGTTGAAAATCTTTTTGATTCGTTTTTCGTATTGATTTCTGGTGTGATGAGATTTGATCCTGAAAACAGGAGATTAGTTCTTCCTGGTGTTCCGCATCTTTTGGATTACGTTCAGGTTGAAGGAACTTTTCCCGATGGGACAAAGTTAATCACTGTTCATAATCCCATTGATTCAGAGGATGGGAATCTGGAGATAGCGTTGCAGGGCTCTTTTCTTCCAGACAAGTTCCCTTCGTTGGAAAGTAGCACAGTGCCTGGCGAGATTATCTGTGTTGATGGTGAGATTGCAATCAATGTTGGGCGGAAAGCTGTAATACTCAAGATAAACAATAAGGGAGACAGACCAATTCAGGTTGGCAGCCATTATCACTTTATTGAGACAAATCCTTCCTTGGTTTTCGATCGATCTAAAGCTTATGGCATGCGCCTCAACATATTAGCAGGATCAGCAACACGATTCGAGCCAGGGGAGCAAAAATCTGTCACCCTTGTAGCTATTGGTGGTAACCAAGTTATCAGAGGGGGAAACGGCATTGCTGATGGTCCAGTGGATGATTCCAAGTTGAAAGAAGTGATGGAAGCTGTGCATTCAAGAGGATTTGGAGATTTGGAAGAAAAAGATGCGAGAGAAGGAGTCGAGCCTCGATTAAGGTGGAGGTTTGTGGTTTCTAACATGAGAAGGAGTAGAGCCTCGACTAAGGAGAGGCTGTTCAAGGGCTCCATAGACTTCAGGGGAGGCACTATGGTGTATTTTGTTCAAGGGGAGGATTGTCGAGAGAGGAGTCCCACATCGGCTAATTTAAGGGTTGATAATGATGAGTCTATAAGTAAGGAATACATCTCCATTGGTGTCACCGGAGATAAGGACGATGTATTCACGACGAGAGTTTCTCATGAGGATTATGCAAACCGGTATGGTCCTACTACTGGTGACAAAGTTCGACTCGGTGACACAGATTTATACGCTGAAATCGAACACGATTTCTCCCTTTATGGAGATGAATGTGTATTTGGAGGTGGAAAGGTTATTAGAGACGGAATGGGCCAATCATGTGGGCATCCACCGGCTTCATCTCTTGATACTGTAATAACCAATGCAGTGATCATTGATTATACTGGAATTTTCAAGGCAGATATTGGTATCAAAGATGGCTTCATTATTTCCATTGGAAAATCTGGCAATCCTGATGTCATGGATGGAGTTTGTCCTAATATGATCATTGGGCTTAATACTGAGGTTATAGCTGGAGAAGGCTTGCTGGTTACTGCAGGAGCTATAGATTGTCATGTGCACTACATATGCCCTCAAATGGTACACGAAGCGATATCGAGCGGCATCACGACACTGGTCGGAGGTGGAACCGGGCCTGCTGAAGGAAGTTGTGCTACTACTTGCACACCATCCCCAGTGCAGATGAAGATGATGCTGCAATCCACTGATGAACTTCCCCTGAACTTTGGCTTTACAGGAAAAGGGAACAGTTCGTTGCCAGATGAGATACATGAAATTATAAGGGCGGGCGCGATGGGAGTGAAGCTACATGAAGATTGGGGATGTACTCCTGCTGCTATTGACAATTGTTTAGCTGTAAACATTCATACTGACACCTTGAATGAATCTGGATTTGTGGAAGATACCATTGCAGCTTTTAAAGGAAGAACTATACACACATACCATAGTGAAGGAGCTGGAGGTGGACATGCTCCCGATATCATTCGAGTGTGTAGCGTGAAAAATGTACTACCGTCGTCGACTAATCCAACACGACCCTTCACGAGCAATACTATAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTCGATCGCAACATTAAAGAAGATTTGGCTTTTGCTGAATCAAGGATAAGAGAGGAAACAATTGCTGCAGAGGATATTTTGCATGATATGGGAGCAATCAGTATCATATCTTCTGATTCACAGGCTATGGGCCGCATAGGAGAGGTGATTTGTAGAACATGGCAAACTGCGCACAAAATGAAGCTGCAAAGAGGACCACTTGATTCCAGTAAACCGGACAACGACAACCTTCGAATCAAGCGATACGTCTCGAAATATACAATCAATCCAGCTATAGCGAACGGGTTTTCTCAGTATATTGGTTCAGTAGAGGTAGGAAAGTTGGCTGATCTTGTCCTGTGGAAGCCATCCTTTTTTGGGGCAAAACCAGAAAAGGTGATTAAAGGTGGTACAATTGCGTGGGCGAACATGGGCGATCCAAATGCGAGCATTCCTACACCCGAACCGATACTAATGAGGCCAATGTATGGATCAATTGGGAAGGCAGGAAGTGGGAACTCAATTGCCTTTGTCAGCAAGGCACTGACCGCGAGTCTTAACGCGGGAGTTAAGGCCATGTATGGTCTAAACAAGAGAGTTGAAGCTGTGGGGAACACAAGGAAGTTGACAAAACTTGATATGCAATGGAATGATGCCCTTCCAAACATAACTGTGGATCCTGAAAACTACGACGTAATAGTAGATGGCGATGTTCTTACCTGCCCGCCCGTCTCGACCGTTCCGCTTTCGACCAACTACTTCCTTTTCTAG 2811 44.65 MGSIDTVTKNIMKLSPREVEKLGLHNAGFLAQKRLARGVRLNYAEAVALIAAQILEFVRNGEKSVADLMDLGKTLLGRFVENLFDSFFVLISGVMRFDPENRRLVLPGVPHLLDYVQVEGTFPDGTKLITVHNPIDSEDGNLEIALQGSFLPDKFPSLESSTVPGEIICVDGEIAINVGRKAVILKINNKGDRPIQVGSHYHFIETNPSLVFDRSKAYGMRLNILAGSATRFEPGEQKSVTLVAIGGNQVIRGGNGIADGPVDDSKLKEVMEAVHSRGFGDLEEKDAREGVEPRLRWRFVVSNMRRSRASTKERLFKGSIDFRGGTMVYFVQGEDCRERSPTSANLRVDNDESISKEYISIGVTGDKDDVFTTRVSHEDYANRYGPTTGDKVRLGDTDLYAEIEHDFSLYGDECVFGGGKVIRDGMGQSCGHPPASSLDTVITNAVIIDYTGIFKADIGIKDGFIISIGKSGNPDVMDGVCPNMIIGLNTEVIAGEGLLVTAGAIDCHVHYICPQMVHEAISSGITTLVGGGTGPAEGSCATTCTPSPVQMKMMLQSTDELPLNFGFTGKGNSSLPDEIHEIIRAGAMGVKLHEDWGCTPAAIDNCLAVNIHTDTLNESGFVEDTIAAFKGRTIHTYHSEGAGGGHAPDIIRVCSVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDRNIKEDLAFAESRIREETIAAEDILHDMGAISIISSDSQAMGRIGEVICRTWQTAHKMKLQRGPLDSSKPDNDNLRIKRYVSKYTINPAIANGFSQYIGSVEVGKLADLVLWKPSFFGAKPEKVIKGGTIAWANMGDPNASIPTPEPILMRPMYGSIGKAGSGNSIAFVSKALTASLNAGVKAMYGLNKRVEAVGNTRKLTKLDMQWNDALPNITVDPENYDVIVDGDVLTCPPVSTVPLSTNYFLF 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7827208 7836330 + Carg21240-RA Car18g00657 166359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00657 936 Hamap Urease subunit beta [ureB]. 162 262 IPR002019 GO:0035550|GO:0043419
Car18g00657 936 Pfam Urease, gamma subunit 12 78 IPR002026 GO:0016151|GO:0043419
Car18g00657 936 Pfam Urease, gamma subunit 102 135 IPR002026 GO:0016151|GO:0043419
Car18g00657 936 Pfam Urease alpha-subunit, N-terminal domain 374 493 IPR011612 -
Car18g00657 936 ProSitePatterns Urease nickel ligands signature. 501 514 IPR029754 GO:0016151
Car18g00657 936 Pfam Urease subunit beta-alpha linker domain 262 291 IPR040881 -
Car18g00657 936 ProSitePatterns Urease active site. 683 699 IPR017950 GO:0009039
Car18g00657 936 ProSiteProfiles Urease domain profile. 503 936 IPR017951 GO:0006807|GO:0009039|GO:0016151
Car18g00657 936 Hamap Urease subunit alpha [ureC]. 373 936 IPR005848 GO:0006807|GO:0009039|GO:0016151
Car18g00657 936 Pfam Urease beta subunit 164 260 IPR002019 GO:0035550|GO:0043419
Car18g00657 936 Pfam Amidohydrolase family 499 818 IPR006680 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00657 K01427 URE; urease [EC:3.5.1.5] - jre:109014748 1241.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01834 Car18g00657 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00657 Car-Chr18:7827208 Car04g01834 Car-Chr4:10620210 2.54E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00657 Car_Chr18 FPKM 249.75 265.947662 128.45047 130.412964 95.619102 103.13015 86.668449 112.370499 116.490829 104.87326