Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00660 ATGAGGCCAGTGGAGGATAAAGGCTGCTATAATCACGAGCCAATAAAACCGCACCGAGGTTCACATCATCGCACAGCGTTAGGAAAACCAACGCCATCGAAATGGGACGATGCGCAGAAATGGATTGTAGGATTTTCGAAAGGCGGAGAGAAAAATCAATCGAAAACCGCACCGAGAAACTCGAACGCAGACGATTTGAGGCTTATAGCTTATGTACCACAGAAAGAGCAGGATTACTCGAGCAACGACGAGGAAGAACAACAACAAAATGAGAATCAATTTGAAGCAGAGACGAAGAATGTCGATTGTCGCGATTCAATTTTGCGAATCGAGAAACAGATTGAGAATCCAGCGGCGGCTGTTAGGTCAATATGCGTGAGGGATACGGGAACGGAGATGACTCCGATTGCTAGCCAAGAGCCTTCCAGAACGGCGACGCCGATTCGAGGCACGACGGCGACGGCGACCGCGCGTAGCCCTATATCGTCTGGATCGTTGACTCCGGCGATGTTCGATCGGGCGAAGCAAGGTACTGAAAGATTTCAGCCGAGGATTCAGGGCAATAATGTCGGAGTAGAATCGAACGCGATTCAGAGCGGTGAAGAATCAAATGGCGGAAGAGTTAGTGAGGAAAATCGGGACTCTGATCAAGCGAAGAAGATGAACTCGCTAGAAACTAGGGCAATGGCTTGGGACGAAGCGGAACGAGCCAAATACATGGCTAGATTTAAGCGAGAAGAAGTGAAGATAGAAGCGTGGGAAAACAAGGAGAAGCGAAAAGCAGAGACGGAGATGAGAAAAATAGAGGTGAAAGCGGAGAGAATGAAGAGTCGGGCGCAGGAGAAGATGGCGAAAAAGCTTGCGAGAGCGACGAGAATGGCGGAAGAGAGGCGAGCAAATGCAGAGGCGAAGCTGAACGAGAAAGCCGTAAAGACATGGGAGAAATCTGATTATGTAAAGAGGACTGGCCATTTGCCTTCTTCCTTCTCCTTCAAGCTGCCCTCTATCTGCTGGTAG 1017 49.36 MRPVEDKGCYNHEPIKPHRGSHHRTALGKPTPSKWDDAQKWIVGFSKGGEKNQSKTAPRNSNADDLRLIAYVPQKEQDYSSNDEEEQQQNENQFEAETKNVDCRDSILRIEKQIENPAAAVRSICVRDTGTEMTPIASQEPSRTATPIRGTTATATARSPISSGSLTPAMFDRAKQGTERFQPRIQGNNVGVESNAIQSGEESNGGRVSEENRDSDQAKKMNSLETRAMAWDEAERAKYMARFKREEVKIEAWENKEKRKAETEMRKIEVKAERMKSRAQEKMAKKLARATRMAEERRANAEAKLNEKAVKTWEKSDYVKRTGHLPSSFSFKLPSICW 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7844803 7846346 - Carg21243-RA Car18g00660 166362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00660 338 Coils Coil 236 256 - -
Car18g00660 338 MobiDBLite consensus disorder prediction 191 222 - -
Car18g00660 338 Pfam Remorin, C-terminal region 224 327 IPR005516 -
Car18g00660 338 Coils Coil 258 304 - -
Car18g00660 338 MobiDBLite consensus disorder prediction 1 16 - -
Car18g00660 338 MobiDBLite consensus disorder prediction 206 221 - -
Car18g00660 338 MobiDBLite consensus disorder prediction 135 167 - -
Car18g00660 338 MobiDBLite consensus disorder prediction 191 205 - -
Car18g00660 338 MobiDBLite consensus disorder prediction 135 166 - -
Car18g00660 338 MobiDBLite consensus disorder prediction 1 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00660 - - - mcha:111019668 470.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00036 Car-Chr6:276475 Car18g00660 Car-Chr18:7844803 2.34E-18 dispersed
Car14g00438 Car-Chr14:2287891 Car18g00660 Car-Chr18:7844803 1.74E-17 dispersed
Car14g01072 Car-Chr14:9472712 Car18g00660 Car-Chr18:7844803 1.36E-17 dispersed
Car12g00056 Car-Chr12:237695 Car18g00660 Car-Chr18:7844803 1.46E-114 wgd
Car18g00660 Car-Chr18:7844803 Car04g01831 Car-Chr4:10604229 0 wgd
Car18g00660 Car-Chr18:7844803 Car05g00062 Car-Chr5:330963 6.42E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004328 2 2 1 1 1 0 4 0 0 1 0 0 3 1 1 3 0 2 3 0 1 2 2 2 2 1 2 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00660 Car_Chr18 FPKM 119.355789 131.586914 0.496582 0.722939 1.767077 1.340341 1.838185 0.355405 0.228848 0.358255