Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00665 ATGTCATTGCTTCTTCAGAAGAATCTTAAGAGCATTTGTGGTGTTCTTGATCGTTGTAAACTATTTGCTTATTTTCATGTATCCTCTGCAAATTTTTCGTCTCTGCTGGAACCTTCCATTTTTATAAGAGCTAGAGATTTGCAGCAAATAATACAATCTGAATATCAGACAAAACTTTCTGATATTGATTTGATCATTTCCAAAGTTCGGGTTGGTAGCAGCGAGGATGAAGTTTTTCAGTCTCTCTTGCACGATCAAGCGTGCAACCGCATACAATTCTCCCATGAACTTGTTTACAAATTGCTCCAACGATTCAAAGATGATTGGAAGTCTGCTTTGGGCGTTTTTAGATGGGCAGAGTCACTCTCTGGATTCAAGCACACACCGGATTTGTATGACGTTATTATAGATACATTGGGGAAAACAAAGCAAATGGTCAAGATGAAAGGTATGCTAGAAGAAATGAAGGAAGCTCAGCTCGTAACGCTTAATACTCTAGCTAAGGCTATGCGAAGGTTTGCCGGTGCTGGACAATGGGAAGATGCTGTGAGAATATTTGATGATTTGGGAACCTTTGGGTTGGAGAAGAACACTGAATCCATGAATGTGCTGCTTGATACTCTGTGCAAAGAGAAGAGAGTTGAACAAGCTCGACGGATATATTTGGATCTTAAGTCCCATATATCCCCAAATGCGAACACGTTCAATACGTTTATTCATGGTTGGTGTAAAGTCGATAGAGTTGACGAGGCACATTGGACATTACAAGAGATGAAAGGACATGGTTATCGTCCTTGCGTCATTAGTTATTCAACGATTATCCTATTTTATTGTCGTCGTTGCAAGTTTAGTAAGGTTTATGAGTTGCTTGATGAAATGGATGCTCAAGGATGCCCTGCAAATGTCATCACTTACACTACTATCATGTGTTCACTAACAAAGTCAGAAGAATTTGAGGAAGCCTTGCAAATTGCTGAGAGAATGAAATCTGCTGGATGTGAACCCGATACGCTGTTTTATAATTGTTTGATCCATACATTAGGGAGAGCGGGTAAAGAACGGGAAGCTATTCATGTATTCGAAGTAGAAATGCCGAGCAAGAGTGTTTTACCGAATACATCGACTTACAATTCTATGATTTCCATGTACTGTCATCGTGCACAAGAACAGAACGCTATGAAATTGCTTGAGGAGATGGAGAAATCAGGGCTTTGTAAACCTGATGTCCAGACATATTACCCATTGCTCAAATCCTGCTTTAGAACTGGAAAGACAGACAATGTTTTGAGCAAGTTGTTGGATGACATGATAAATAAACAGCATTTGAGTCTTGATATATCAACTTATTCCCTTTTAATTCATGGTCTTTGTAGAGCAAATAAGTGCGAGTGGGCTTACCAGCTATTTGAGACGATGATCGGTCAAGATATAAAGCCGAGATACCTTACATGTAAACTGCTTCTGGATGAAGTTAAGCAGAAGAACATGGATGAAGTTGGCGAGAGGATTGAAGATATCATGAAGAAATTGTGA 1533 39.4 MSLLLQKNLKSICGVLDRCKLFAYFHVSSANFSSLLEPSIFIRARDLQQIIQSEYQTKLSDIDLIISKVRVGSSEDEVFQSLLHDQACNRIQFSHELVYKLLQRFKDDWKSALGVFRWAESLSGFKHTPDLYDVIIDTLGKTKQMVKMKGMLEEMKEAQLVTLNTLAKAMRRFAGAGQWEDAVRIFDDLGTFGLEKNTESMNVLLDTLCKEKRVEQARRIYLDLKSHISPNANTFNTFIHGWCKVDRVDEAHWTLQEMKGHGYRPCVISYSTIILFYCRRCKFSKVYELLDEMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGCEPDTLFYNCLIHTLGRAGKEREAIHVFEVEMPSKSVLPNTSTYNSMISMYCHRAQEQNAMKLLEEMEKSGLCKPDVQTYYPLLKSCFRTGKTDNVLSKLLDDMINKQHLSLDISTYSLLIHGLCRANKCEWAYQLFETMIGQDIKPRYLTCKLLLDEVKQKNMDEVGERIEDIMKKL 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7877259 7878791 - Carg21248-RA Car18g00665 166367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00665 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Car18g00665 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Car18g00665 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Car18g00665 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Car18g00665 510 Pfam PPR repeat 132 158 IPR002885 -
Car18g00665 510 Pfam Pentatricopeptide repeat domain 289 348 IPR002885 -
Car18g00665 510 Pfam PPR repeat 442 472 IPR002885 -
Car18g00665 510 Pfam PPR repeat family 196 244 IPR002885 -
Car18g00665 510 Pfam PPR repeat family 371 420 IPR002885 -
Car18g00665 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Car18g00665 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 371 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00665 - - - csv:101208612 869.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01560 Car-Chr14:12777498 Car18g00665 Car-Chr18:7877259 2.36E-103 dispersed
Car18g00665 Car-Chr18:7877259 Car04g01295 Car-Chr4:7494175 3.41E-49 dispersed
Car18g00665 Car-Chr18:7877259 Car15g00602 Car-Chr15:3339582 5.01E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1144 . . . . . Bpe10g00778 . Bma15g00243 . . . . . Car18g00665 Sed06g0134 Cpe09g00570 . Bhi07g01872 Tan04g0097 Cmetu10g0012 Lac13g0085 Hepe10g1542 . . Cla05g02634 Cam05g2827 . Cco05g2896 Clacu05g2832 Cmu05g2679 Cre05g2795 . Cone19ag1108 . . Lsi04g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011749 1 1 0 2 1 0 2 1 1 1 1 1 1 0 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00665 Car_Chr18 FPKM 7.849858 9.59289 15.937617 17.493149 48.906326 45.231869 52.730556 14.021695 13.159814 14.178638