Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00666 ATGGATTTTGCTTCTGTAATCGTAAATGCTGTGTTTATTTTTGCATTTTCGATATGGGTTTTGGTTCATTTTCGATGTGGAAACCCTCGATTGAGAAACACGGCGGCTCGAGGATCTAAATGGCTGATCAGAATCACGATCTTTTCTAATGCTGTTCTTCCGTTCTTGTATTGTGGTTTTGCTGTTTATGAATATTTGAATAGCAAATTTGTTTGTTGGGAATTGGCCATTTCTGCTTTAACTTGGAGTTTGGCTGCTGCTATTGCTATCTACTGGAGAAATGGTGTGTATCATGAAGGCAAACCATGGCCTATGATTCTAATTGTTTGGTGGGTTTTCTCTTGTTTCTATGGTTTAGGTTGTTTGATTCTTTTCCTGCTTACCCACTTGAAATCCATGGAAATCCCTCGTTTTCTTCCAAAACCCACCATTGTAGACTGTGCTTCCTTCACTTTGTGTTTGATAATCTGTTGTACTGCACTGACTGTTAGCTATTCCAAGAACCACAATGATCTTGAGAAGCTATTGCTTCAGACAGAGAATGTTTGTTCTTCTGAAGATCATGGTGGTTTTGTGAGTCCTGGATTGTGGAGTCAAATTACATTCCGATGGATGAACCCTCTGTTCAAAAAGGGAAGGATTCAAAAACTTGAATTAGCTCATGTTCCTTGTGTTCCTCAATCTGAAACAGCCGAGTATGCTTCCATGTTGCTCGAAGAATCGCTTGAGAGGACGAAAATCGAATCGTCTTCCTTGCCTAAAGCTATTGTTCTAGCTACATGGAAGCCCCTGGTCTTAACAGCAATCTTTGCAGGTGTCAACACATTAGCATCGTTTATGGGGCCTGTTCTAATCACCAATTTTGTGAACTATCTATTGCGAAAGGACGACGACTCGAGCAACCGTGACGGGTTGATTCTTGCATTCTTCTTCTTTTTCGCCAAGACATTGGAGTCTCTTACTCAAAGACAATGCTATTTCGGCACTCACCGTCTCGGTATACAGATAAGAGCAGCTCTTACAGTGATGATTTACAAGAAATGTGTTTCTATAAATGCTGCTGGTCCAAGTAATGGTAAAATAACAAATCTAATTAATGTAGATGTTGAAAGAATTGGAGATTTCTCTTGGTATATTCACAAGATTTGGTTGCTTCCTGTTCAAGTAGTTCTAGCTCTCGTTATCCTTTATATGAATCTTGGACTTGCTCCTTCCATTACTGCTCTTTTAGCCATAGTATTCATAATGGTGGGCAATACGCCTTTGGCGAGTATTCAAGAAAGTCTACACTCGAAGATAATGGATGCGAAAGATTCCCGGATCAAATTGACCTCAGAGACTCTAAGAAACATGAGAGTCTTGAAACTGCATTCTTGGGAACAGACGTTTTTGAAGAAGATCTTGAAACTTAGAGACGTTGAGCGAGGCTGGTTGAAGAGATACCTCTATACATGCTCGGTTATAGCAGTTCTCTTTTGGGTGTCACCAACTTTAGTTTCAGTAGTCACTTTTGGTGCTTGTGTTTTGATGAATGTCTCTCTAACAGCAGGCACAGTGTTATCAGCCATAGCTACTTTTCGGATCTTACAAGAACCGATATATAATCTACCCGAGCTAGTTTCCATGATTGCTCAAACGAAAGTTTCCCTCAACCGTATTGACGAGTTCATTCGAGAAGAAGATCAAAGGAAACAGATTTATTATCCTCCATCTAGTTCATCAGACATCATGGTTGAAATAGAGGTGGGAGAGTATTCATGGGATGCCAGTGATCGAAACATTAAACCGACGATAAACATTGTAGAGAAGATGCAAATACCAAAGGGTTACAAGGTTGCAGTTTGTGGATCGGTTGGTTCAGGAAAATCGAGCTTACTTTGTAGTATACTCGGCGAGATTCCACAGATTTCAGGAACACAAATGAAGGTACATGGAACTAAAGCTTATGTTCCCCAAACTGCTTGGATTCAATCAGGCACGGTTCGAGAGAACGTGCTCTTTGGGAAGGAAATTGATGAACGTTTTTATGGGGATGTGTTAGAAGGCTGTGCTTTGGACCAGGATATCAAGCTGTGGCTGGATGGAGATTGTACTTTATTGGGAGAGAGGGGGCTGAACTTAAGTGGAGGCCAAAAGCAGAGAATTCAATTGGCAAGGGCTGTCTATAGTGATGCTGATGTTTACTTCCTGGACGATCCGTTCAGCGCCGTGGACGCTTGTACCGGAACACATTTGTTCAAGAGATGTCTTTTGCAACTTTTGTCTGATAAGACTGTCTTGTATGCTACTCATCACTTGGAATTCATAGAAGCCGCCGACCTCGTTCTGGTGATGAAGAATGGTCATGTTGTTCAATCAGGAAAGTATGCAGAATTGATATCAGACTCAAATGGTGAGCTTGCTAGGCACATTGCAGCACACAGAAAGTCATTGAATGGAGTTAAACCATTCAAAGAGGATAAACCTCATCTTAAACCATGTCAGATGGAAGCTCAAGATGAAAATTCTTCCCTGAACCTTGGAAATGGAGACCTTATGAGGACTCAAGAAGAGGAATCTCAAACCGGTCGTGTAAAATGGAGCGTCTACTCGACCTTCATTACATCAGCTTATAAAGGAACTCTTGTTCCTGTTGTCCTTCTATGTCAAGTTTTCTTTCAAATCCTTCAGATGGGTAGCAATTACTGGATTTCTTGGGCAACAGAAGAAGAAGGCAAGGTCAGCAGAGAGCAACTGATAGGGATCTTCATTTTGATGTCGGGCGTGAGCTCCGTCTTTATATTAGGTCGGGCCATTGTGATGGCAACCATTGCTATTGAGACTGCACAACGGATGTTCCTTGGAATGGTGACATCAATTTTTGCTGCACCTATTTCTTTCTTTGATGTCAAACCTTCAAGCCAAATCCTTAACAGATCATCTAATGATCAAAGCACTTTGGATACAGATATCCCTTATAGATTAGGAGGATTGGCCTTTGCACTAATTCAGCTGTTGAGTATCATTATCCTGATGTCCAAGGTTGCATGGCACGTTTTCCCCCTCTTCCTTGTCGTCCTCGCTATTTCTATATGGTATCAGGGATACTACATCAGTACAGCTAGAGAATTAGCTAGAATGGTTGGGATTCGAAAAGCTCCAATTCTTCATCACTTTTCTGAAACAGTTGTAGGTGCAACTATCATTCGTTGTTTCAGTCAAGAAGATCGTTTCTTAACGAAAATACTCGAACTAGTTGATGATCATTCTCGTATCGTTTTCCACAACTCAACTTCAATGGAATGGTTATGCCTCCGAATCAATTTTCTTTTCGACGCAGTCTTCGTTCTTGTCCTCGTCATCTTAGTAACCCTTCCTAGATCTGCTATCAACCCAAGTTTAGCAGGATTAGCAGCCACATACGGTTTAAACTTAAACGTTCTTCAATCTTGGGTCATATGGAATCTATGCAATGTTGAGAACAAAATGATATCTGTTGAGAGAGTTCTTCAGTTCACTAACATAGCTTCTGAGGAGCCACCGGTGGTTCATGATTGTAGGCCAGCGCCAGAATGGCCAAAGGAGGGGAACATAGAACTTGAGGACCTTCATGTTCAATACCGTCCTAATCTTCCAATGGTTCTGAAAGGAATCACTTGTACCTTCCCTAAAAGGAAGAAGATTGGTGTTGTTGGCAGGACAGGAAGTGGCAAGTCCACGTTAATCCAAGCACTTTTTAGGATGGTTGAGCCGTTTGCAGGAAGGATACTCATTGATGGAGTTGATATTGCTAAAATGGGTCTTCATGATCTGAGGTCTAGGCTGGGTATCATTCCACAAGACCCAACATTGTTCAAAGGAACCATGAGAACAAATCTTGACCCTTTGCAGCAACATACTGATCAAGAAATATGGGAGGTCCTTCGGAAGTGTCGGTTCGCCGAGATCTTCAAGACGGATCAAACGGTTCTTGAAGCACCAGGTGGTTTATGTTATCTTTTACTCATGAGTACTGTTTTGGTGTTGGGAAATGTTGCAGTTGCTGAAGGTGGAGAGAATTGGAGTGTTGGACAGCGGCAGCTTGTTTGCTTAGCCAGAGTGCTTCTTAAGAACCGTAGGATTCTTGTTTTGGATGAGGCAACAGCTTCCATTGATACTGCGACAGAGAATATAATCCAAGAAACGATACGAGAAGAGACGAAAGGATGTACTGATGAAGATCCTATGAGCAATACCAAAATCCTAGCAAATACCACTCACAAGCTTTCTAACAATAGTTGA 4260 41.55 MDFASVIVNAVFIFAFSIWVLVHFRCGNPRLRNTAARGSKWLIRITIFSNAVLPFLYCGFAVYEYLNSKFVCWELAISALTWSLAAAIAIYWRNGVYHEGKPWPMILIVWWVFSCFYGLGCLILFLLTHLKSMEIPRFLPKPTIVDCASFTLCLIICCTALTVSYSKNHNDLEKLLLQTENVCSSEDHGGFVSPGLWSQITFRWMNPLFKKGRIQKLELAHVPCVPQSETAEYASMLLEESLERTKIESSSLPKAIVLATWKPLVLTAIFAGVNTLASFMGPVLITNFVNYLLRKDDDSSNRDGLILAFFFFFAKTLESLTQRQCYFGTHRLGIQIRAALTVMIYKKCVSINAAGPSNGKITNLINVDVERIGDFSWYIHKIWLLPVQVVLALVILYMNLGLAPSITALLAIVFIMVGNTPLASIQESLHSKIMDAKDSRIKLTSETLRNMRVLKLHSWEQTFLKKILKLRDVERGWLKRYLYTCSVIAVLFWVSPTLVSVVTFGACVLMNVSLTAGTVLSAIATFRILQEPIYNLPELVSMIAQTKVSLNRIDEFIREEDQRKQIYYPPSSSSDIMVEIEVGEYSWDASDRNIKPTINIVEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQISGTQMKVHGTKAYVPQTAWIQSGTVRENVLFGKEIDERFYGDVLEGCALDQDIKLWLDGDCTLLGERGLNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSDKTVLYATHHLEFIEAADLVLVMKNGHVVQSGKYAELISDSNGELARHIAAHRKSLNGVKPFKEDKPHLKPCQMEAQDENSSLNLGNGDLMRTQEEESQTGRVKWSVYSTFITSAYKGTLVPVVLLCQVFFQILQMGSNYWISWATEEEGKVSREQLIGIFILMSGVSSVFILGRAIVMATIAIETAQRMFLGMVTSIFAAPISFFDVKPSSQILNRSSNDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWHVFPLFLVVLAISIWYQGYYISTARELARMVGIRKAPILHHFSETVVGATIIRCFSQEDRFLTKILELVDDHSRIVFHNSTSMEWLCLRINFLFDAVFVLVLVILVTLPRSAINPSLAGLAATYGLNLNVLQSWVIWNLCNVENKMISVERVLQFTNIASEEPPVVHDCRPAPEWPKEGNIELEDLHVQYRPNLPMVLKGITCTFPKRKKIGVVGRTGSGKSTLIQALFRMVEPFAGRILIDGVDIAKMGLHDLRSRLGIIPQDPTLFKGTMRTNLDPLQQHTDQEIWEVLRKCRFAEIFKTDQTVLEAPGGLCYLLLMSTVLVLGNVAVAEGGENWSVGQRQLVCLARVLLKNRRILVLDEATASIDTATENIIQETIREETKGCTDEDPMSNTKILANTTHKLSNNS 1419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7880293 7887086 - Carg21249-RA Car18g00666 166368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00666 1419 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1191 1419 IPR003439 GO:0005524
Car18g00666 1419 Pfam ABC transporter transmembrane region 892 1118 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car18g00666 1419 Pfam ABC transporter transmembrane region 266 532 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car18g00666 1419 Pfam ABC transporter 1208 1375 IPR003439 GO:0005524
Car18g00666 1419 Pfam ABC transporter 604 734 IPR003439 GO:0005524
Car18g00666 1419 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 580 805 IPR003439 GO:0005524
Car18g00666 1419 SMART AAA_5 608 782 IPR003593 -
Car18g00666 1419 SMART AAA_5 1217 1403 IPR003593 -
Car18g00666 1419 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 265 545 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car18g00666 1419 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 878 1154 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car18g00666 1419 ProSitePatterns ABC transporters family signature. 707 721 IPR017871 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00666 - - - csv:101219301 2289.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01826 Car18g00666 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00666 Car-Chr18:7880293 Car18g01208 Car-Chr18:11653283 0 dispersed
Car18g00666 Car-Chr18:7880293 Car18g00667 Car-Chr18:7896731 4.74E-11 tandem
Car18g00666 Car-Chr18:7880293 Car04g01826 Car-Chr4:10581713 7.82E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00666 Car_Chr18 FPKM 0.0 0.0 3.154193 0.0 0.0 0.0 0.0 0.0 0.0 0.0