Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00674 ATGTCTGAGAATCATGATCCAGAGCAGTCGCTGCTGAGTTCAGGAACTGGAGCTGAAGATGGAAATAATGGGGTGGAAATTGTGGAAATTACGGTTAATGATGGTGTTGTGGAGTCATCCTCTGAGACGGCCGCGGACATTGTTTCGGAGAATGACTCCGTTTTGCAGTCCTCTGAGATATCCAGTGGATTTGTCCCGTCGGAACCGAACCAGGGATCGGCGATATCGCCAGAGAGTCCTCGAACCGAAGGTGCAGAGAACTCGCCACAAGATGACTCCGATGATATTGTAATAGTCGAAGATGTTGGAAAAGAAGATATGTTTGTGGACTGCCCGGACGAGTTGGTTGGCAATGCTGATATCAGAGAAGCGGTAGCAGCTGCTGAAACTCAAGGTAGTTTGACGGAGGAAGCGCCTTCTGATACGCAGGAATTACAGTATGAGGTAGAAAAAGTTTCTTTTATACACGAGGTCGAAAATACGAGGGCCACTCTGAATGAGACCATTTTTGAGAAAGAAAATGTCATACAAGATTTTGAGGAAGAAAGAGAAGCTTTTGTGCAAGAACTTCTTAGCATTTGTCGCCAATTAAAGACTGCTACTAATCAACAGTCATTGTTCAATATTACTGGCAGTCAGTTGAACGAGAGTGTTCATTTGTATGGAATCGAGCAGGTTGAAGAGAACACTTCGGTTACTAATTCCACATTGAAAGACCTAATAAATGAATGCTCACAATTGGTTAATAGGACTTTAGATGAACGGTTGCAGTACGAGGCTACTATAGGAGAACTGCGTAATAGCCTCTTAATGAAGGATCAAGAGATTGAATATCTTAATGCAAAGGTTGTCGAAATTTCGGTGACTGATGAAGTTGTTCGCTCTTATGCAAATTCAATTGAAGATTCTATGAAAATTTCGTTAGAGAAGGAGAGGGATACGAATGCCACATTAGACAGGGTGCTAGCTTCTGTCAACTCAGTATTGAATCAGCAAGATCTTCCTGGCGATTCTACATCTGAGAAAACAGTTCTTGTTGAAAGAAGCGCTTCTCTGTTGGTTGATAATTATAAAAAAATCCTTCTGGAAATCAATCAACTCCAAAAATGTTTATCTGGGGCAGAGTCCGACACCGTCTTTGCAGGATTGGAAACGATTTTGGGCTCTGCTTGTGATGAGTTAATTGAGCTCAAAGCTAAAGAGGTAAGCAATGTTGCAAAAATGCATCAACTGGAAGATGAAAATAGAAGATTGGCTGTTGAGCTAGACAATTACAGATTGACAGTTGAGACTGTTAATGCAGAACTTGAAAAAGCAAAAAGTGAACTGGAACAGGAAATGATGAGGGGTGCTAGTACCAAAGAGAAGCTAAAAATGGCTGTGACAAAAGGCAAGGCATTAGTACAGCAACGTGATGCATTAAAACAGTCTCTAGCTGACAAAGGTCTTGAGCTTGAAAAATATTCTATCGAATTACAAGAGAAATCAAATGCCTTGGAGGCTGCAGAACTAATTAAGGTTGACTTGGCTAAAAATGAAAATTTAGTTGCATCACTTCAGGAAAATTTGTTGCAAAGGAATACGGTCCTTGAAACATTTGAGGATATCATATCTCAAGTTGAAGTTCCTCGTGAACTCACGTCAATGGATAGTATAGAAAGAATCAAGTGGCTTGTGGATGAGAAGAAGGTCCTGGAGGCTATTTTATTGGAGTTTCATAAACTAAAAGATAATCAAAACTTATCTGATTTTCCAGATTTGATTGCACCTTATGACCTGAAATCTTCCGTCAGTTGGCTTAAGGAATCATTTTTTCAGGCTAAAGATGAAATAATGATCTTGCGAGATGAACTTGTTAAAACAAAAGAAGCAGCATGTGGAGAGATTGACCGCATAAGTGCATTACTTTCAATTGAATTACAGGAAAAGGACTATATCCAGGAGGAGTTGGATGATCTGTTAAGAAAACATGAAGATCTGTTAAGAAAACACGAAGAGGTCATGATAAAAGAGCATCAGGCTTCGTTGGAGAAGGCTCAAATCATAAAAATGTTACAAGAAGAATCTGGAATGATAACAGATGATGGAGGGATCAGTGAAATTTCGTTGGACTTAAACTTGCTTGCTTACAGATGCTTTCAGAGGATAAAAGAGCAGGCCAGTGTTGCTGCTGAAGTTTCTAGTGAATACGTAGAATCTTTTGCAAAGGTTCAAACTCTTTTGTATGTTAGTCATCAGGATTTGATGCTCCATGATATACTCCTAGAAGAGGAGTCTTCTAATATCAGCAATTACTCAACTAGATTAAGATCAGTATCTCAAGAACTTAGAGAAGTGAAAGAGGAAAATGACTCTTTGCAGAGAGATATCCAAAGATCAGAGGAGAAATATGCCATGCTAAGGGAAAAGTTGTCCTTGGCAGTCAAGAAAGGCAAAGGACTTGTTCAGGACAGGGAAAATATGAAAAGTGTCTTAGATGAAAAGAACATAGAAATAGAGAAGTTGAAATTACAATTAGATGGTCTAGAATCAACAGTTGATGATTGCAGAAATCAAATCAATTTGTTGTCTATTGATACACAGCGCATTCCAGAGTTGGAGGCTGATCTTGATATTTTGAAGGGAAAATGCAATCAATATGAGCAGTTCTTATTAGAGAGCAATAATATGTTACAGAAAGTAATTGAATCAATTGATGGAATTGTTCTTCCCATTAATATAGTTTTTGAAGAGCCTATAGCTAAGGTGAAGTGGATTGCAGACTACATTAGGGAATCACATGATGCTAAGATATGTAAAGAACAAGAATTGGAGAGTATTAAAGAGGAATTAATTACTATGGAAAGTAAATTAAGAGATGCTTTAGCTGCTATGAACTCATTGGAAATTGCATTATCATCTGCTGAGAAAAACATTTTTCAACTTTCTGAGGAGAAAAAGGAAATAGAATCTAGTAAGATGCACATTGAACATGAATTACAGAAAGCATTAGATGAAGCCTATTCACAGTCCAGCAAGTCCGCAGAGACTTATTCATCCATGAACCTACTTCAAGAATCATTATCACAGGCAGAAAATAAAATACTTGCGCTTGTCAAAGAGAAAGAAGAAGCTGAAGTTTGTAAAGTCACTGTAGAGATGGAGTCTAAAAAAGTAAAGGAGGAAGTGGCTATTCAGATAGATAAATTGGCAGAGGCCCAGAGAACTATAAACACGTTAGAAAAGACATTAATCGAGCTTGAGACAAATGTTGCTTTGCTGAATGAACGGAATGCTGAAGCACAAAGTGCTATAGAGAAGCTAGAAACTGAGCGAAAGATATTGCAAGAGGAAGTCAGCTCTCAAGAGAGCAAAGTTGTTGAGGCAGTTGAATCAATAACATCTTTGGAAAATGCATTACGTAAGGCAGAAAGTAAAATTTCTATAATTGAAGGTGAGAGGAAAGATTCTGAAAATGAAATATTTGCTCTAAATTCCAAATTAAATGCATGCATGGAAGAGTTGGCCGGGACTAGTGGCAGCTTAGAGAGCAGATCTATAGAGTTTGCGGGCTACCTCAATGATCTTCATAAGTTTATTGCAGATGAGACATTGTTGACTGTGGTGACAGGATGCTTTGAGAAGAAATTTGAGAGACTAAGAGAGATGGATATCGTTCTGAAGAACACTAGTGATTGTTTTGTTAACAGCGGTCTAATAGGTTCTCATAACCATCATGCTGTTAAGGATCCGCATGCTATGGAGTCCCTCTCTCATGAAAAGCTCCTTGATTTTGCTGCTGAAATTGAAAGTGGTAAGGTGGTTGTTGAAGGTGATGCTGGCAACATTTCTTCATCTTTTAGAAAGATTATGGAAGGAATCTGGTTAAAGAACAAAAGATTCACAGATTATTTTGAAGGTTTCTCCTCTTCAATGGATGGGTTTATGGCTGATCTGTTAAAAAATGTAGAAGCAACAAGGGAGGAAGTAGTTTTTGTGTGTGGACACGTTGAATCCTTGAAAGAGATGGTGAAGAATCTCGAAATGTATAAACAGGAACAAGAAAATACCAAAGTGATGCTGGAAGATGATGTTTCACTTTTATTGTCTGCCTGTGTTGAAGCAACAAAAGAACTTCAGTTTGAAATGACCAACCATCTACTTTTCCTCGACTCTATTCCCGAACTTGACAACTTGAAGGATAGCATACCCATGGAAAGTAGTGAAACTAATGGAGCTTCAGCCGCAGAGTCTCCCGCAAATTCTACTAGAAGCAAGTCAGCTGCTGCTGTAGAAAAATTATTGGCTGCAAGTAGAAAAGTTCAATCTATGGTTAAACAGTTTGAGAGCGTCATTAAGGGTTCTGCTGCTAGAATTCAAGATACACAGCATATATTAGAAATAACTGAGGCAACTACTGAGAAAGTTAGAGAGGAAAGGGACTTGAACAAACATATGGTAGTTAAGTTGGAGGCTGATTTACTACTATTACAGAATTCCTGTGATGATCTGAAGCGTCAACTGGAGGTCTGTCAGGCAAATAAAGAAGAGTTGAAAGAAAGAGAGGCTGAAGTTTCATCATTGTATAGTAGTTTGGTGAAAGAACAAGAAGACTGCGTTTTGTCAGCAATGCAAATGAAAGCCCTCTTTGAGAAAGTTAGAAGAATCGAGTTCCTTTTTCAAGAATCAGAATATCAAGATCTGGAACAATATGATTCACCTGATGTAAAGAAGCTCTTTTACCTAACTGATTATGTTTCTGAGTTACAAAATCAGCTAAAATTATTATCTCATGACAACCAAAAGCTGCAGTCTACAGTGACTACACAAACACTTGCAATTGAACAGCTAAAAGAGGAGGTTGATAGAGCATTGAGGGATCATCTCGATTTAGAGGAGTTGAAGAAAGATCTCTCAGAGCTTTCTTATTCTTTGGAACAACAAAATAGTTTGTTGGGTAGTAAATATAGTGGAGATTCTGAGTCCGATGGGTTGAAGGAACTAGTAAGAACCATAGGAAGGCAGGTCCTGGATTTGCTTTCAGAATCTGAAAATTCAAAAACCAAAGTTGAGGAACTGAGTAAGAAGTTAATAGGTAGCCAAAAGGTTGTGGATGAACTAACTACCAAGAATAAGCTACTTGAAGAGTCACTTCATGGCCGGACATCTCAATCAGAGATCATAAAAGAAAGGGGCATCTTTGAAGCACCATTTCCTTCTGGATCAGAGATATCAGAAATTGAAGAAGCGGGACCAGTCGGGAAAAGTACAATACCGCCTGTTCCACCAGCCTCAGCTGCCCATGCTCGAATGTTGCGAAAAGGTTCAACTGATCATCTTGCGATTGACGTAGAAACAGAATCCGATCGTTTAATAGGAAATGCCATGGAAATTGATAAAGACAAAGGTCATGCGTTCAAATCTCTCAATTCATCAGGTCTCATCCCAAGACATGGAAAACTTGTTGCAGATCGAATTGATGGAGTTTGGGTCTCCGGCGGTCGAATTCTAATGAGTCGTCCAGGCGCAAGGCTAGGTCTCATTACCTACTGGTTCTTGATACACATATGGTTACTGGGAGCCATTTTGTGA 5571 38.84 MSENHDPEQSLLSSGTGAEDGNNGVEIVEITVNDGVVESSSETAADIVSENDSVLQSSEISSGFVPSEPNQGSAISPESPRTEGAENSPQDDSDDIVIVEDVGKEDMFVDCPDELVGNADIREAVAAAETQGSLTEEAPSDTQELQYEVEKVSFIHEVENTRATLNETIFEKENVIQDFEEEREAFVQELLSICRQLKTATNQQSLFNITGSQLNESVHLYGIEQVEENTSVTNSTLKDLINECSQLVNRTLDERLQYEATIGELRNSLLMKDQEIEYLNAKVVEISVTDEVVRSYANSIEDSMKISLEKERDTNATLDRVLASVNSVLNQQDLPGDSTSEKTVLVERSASLLVDNYKKILLEINQLQKCLSGAESDTVFAGLETILGSACDELIELKAKEVSNVAKMHQLEDENRRLAVELDNYRLTVETVNAELEKAKSELEQEMMRGASTKEKLKMAVTKGKALVQQRDALKQSLADKGLELEKYSIELQEKSNALEAAELIKVDLAKNENLVASLQENLLQRNTVLETFEDIISQVEVPRELTSMDSIERIKWLVDEKKVLEAILLEFHKLKDNQNLSDFPDLIAPYDLKSSVSWLKESFFQAKDEIMILRDELVKTKEAACGEIDRISALLSIELQEKDYIQEELDDLLRKHEDLLRKHEEVMIKEHQASLEKAQIIKMLQEESGMITDDGGISEISLDLNLLAYRCFQRIKEQASVAAEVSSEYVESFAKVQTLLYVSHQDLMLHDILLEEESSNISNYSTRLRSVSQELREVKEENDSLQRDIQRSEEKYAMLREKLSLAVKKGKGLVQDRENMKSVLDEKNIEIEKLKLQLDGLESTVDDCRNQINLLSIDTQRIPELEADLDILKGKCNQYEQFLLESNNMLQKVIESIDGIVLPINIVFEEPIAKVKWIADYIRESHDAKICKEQELESIKEELITMESKLRDALAAMNSLEIALSSAEKNIFQLSEEKKEIESSKMHIEHELQKALDEAYSQSSKSAETYSSMNLLQESLSQAENKILALVKEKEEAEVCKVTVEMESKKVKEEVAIQIDKLAEAQRTINTLEKTLIELETNVALLNERNAEAQSAIEKLETERKILQEEVSSQESKVVEAVESITSLENALRKAESKISIIEGERKDSENEIFALNSKLNACMEELAGTSGSLESRSIEFAGYLNDLHKFIADETLLTVVTGCFEKKFERLREMDIVLKNTSDCFVNSGLIGSHNHHAVKDPHAMESLSHEKLLDFAAEIESGKVVVEGDAGNISSSFRKIMEGIWLKNKRFTDYFEGFSSSMDGFMADLLKNVEATREEVVFVCGHVESLKEMVKNLEMYKQEQENTKVMLEDDVSLLLSACVEATKELQFEMTNHLLFLDSIPELDNLKDSIPMESSETNGASAAESPANSTRSKSAAAVEKLLAASRKVQSMVKQFESVIKGSAARIQDTQHILEITEATTEKVREERDLNKHMVVKLEADLLLLQNSCDDLKRQLEVCQANKEELKEREAEVSSLYSSLVKEQEDCVLSAMQMKALFEKVRRIEFLFQESEYQDLEQYDSPDVKKLFYLTDYVSELQNQLKLLSHDNQKLQSTVTTQTLAIEQLKEEVDRALRDHLDLEELKKDLSELSYSLEQQNSLLGSKYSGDSESDGLKELVRTIGRQVLDLLSESENSKTKVEELSKKLIGSQKVVDELTTKNKLLEESLHGRTSQSEIIKERGIFEAPFPSGSEISEIEEAGPVGKSTIPPVPPASAAHARMLRKGSTDHLAIDVETESDRLIGNAMEIDKDKGHAFKSLNSSGLIPRHGKLVADRIDGVWVSGGRILMSRPGARLGLITYWFLIHIWLLGAIL 1856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7925238 7932354 + Carg21257-RA Car18g00674 166376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00674 1856 Coils Coil 643 670 - -
Car18g00674 1856 Coils Coil 1056 1153 - -
Car18g00674 1856 Coils Coil 162 182 - -
Car18g00674 1856 MobiDBLite consensus disorder prediction 1 20 - -
Car18g00674 1856 Coils Coil 1579 1644 - -
Car18g00674 1856 Coils Coil 1014 1041 - -
Car18g00674 1856 Coils Coil 930 999 - -
Car18g00674 1856 Coils Coil 485 505 - -
Car18g00674 1856 Coils Coil 818 852 - -
Car18g00674 1856 MobiDBLite consensus disorder prediction 39 95 - -
Car18g00674 1856 MobiDBLite consensus disorder prediction 1 26 - -
Car18g00674 1856 MobiDBLite consensus disorder prediction 1396 1418 - -
Car18g00674 1856 MobiDBLite consensus disorder prediction 39 86 - -
Car18g00674 1856 MobiDBLite consensus disorder prediction 1393 1418 - -
Car18g00674 1856 Coils Coil 755 810 - -
Car18g00674 1856 Coils Coil 1480 1514 - -
Car18g00674 1856 Coils Coil 408 453 - -
Car18g00674 1856 Coils Coil 1330 1357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00674 - - - csv:101218359 2519.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01816 Car18g00674 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01195 Car-Chr1:11063270 Car18g00674 Car-Chr18:7925238 1.78E-06 dispersed
Car09g00459 Car-Chr9:2551911 Car18g00674 Car-Chr18:7925238 9.71E-12 dispersed
Car18g00674 Car-Chr18:7925238 Car04g01816 Car-Chr4:10530597 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1114 . . . . . . . . Cmo04g01902 Cmo18g00713 . Cma18g00726 . Car18g00674 Sed06g1718 Cpe09g00563 Cpe01g01587 Bhi07g01850 Tan04g0116 Cmetu10g1236 Lac13g0100 Hepe10g1555 . . Cla05g02625 Cam05g2815 Cec05g2851 Cco05g2882 Clacu05g2819 Cmu05g2667 Cre05g2783 . . Cone8ag0714 . Lsi04g00640 . . . . Blo11g00999 . . . . . . . . . Cma04g01803 . Car04g01816 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004326 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00674 Car_Chr18 FPKM 10.423679 11.313056 15.547228 17.042278 13.454637 13.086718 12.649 22.890438 23.487356 23.466873