Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00678 ATGGATGCCACGACAAGCGAAACGGCGCCTATACAATTCCATACCATTCCCGATCAGTCGGTTTCGAGTATCGTTACCAATCCAGCGTCGACATTTCCTTTATCGAAACGCCATTGCTTTGGGGAATCCTGCCCCGGTGAATTCCCCTTAGCTGCTAATCCTTCTATTGTTCTTCATGTCTTGACAGCATGTAACTTGGATCCCAAAGACCTTGCGAAGTTAGAGGCAAGTTCTTACGTTTTTCGGTTGTTCGGGTTTACCAGCATTGTTGTGACTTACTCTAGGATTGATTTTGGTTGTGTGTGTGTGTGTGTGTTGCAGGCGACGTGTTCGTTCTTTAGACAGCCTGCGAATTTCGCTCCTGATTATGAATTATCGATTTCGGAACTTGCTGCGTTGGATATGTGTCGAAAGAGAGCTATATTTAAACCTATGACAACAGAGCAGCAGCAAGGTTTGAAGCAAAGATGTGGTGGTTCATGGAAACTGGCATTGAGGTTTTTACTGGCTGGAGAAGCTTGTTGCAGAAGGGAGAAATTCCTGGCGATAGCTGGACCCGGTCATAGCATCGCAGTCACGTCGAAAGGAGCTGTTTACTCGTTTGGTTCCAACAGCTCAGGACAGCTTGGACATGGTACGACCGAAGAAGAATCACGACCTCCTCGCCTAATCAGGTTGCGAAATTCCCAACAAATCTTTGACCTGATACAAAGAGACATACATAGTATAAACATTAATGGACTCCGTGTTGTCGTGTTGGCGTGTTGTTGCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGCAGCAGGGTCCGGGAGGACAATGTTAATCAGCGATGCCGGGCGTGTTTATGCATTTGGCAAGGACTCATTTGGTGAAGCTGAGTATGGAGCTCAAGGAGCTCAAGTCGTTACGACACCGAAGTTGGTCGAATCGCTTAAGGATATATTTGTGGTGCAAGCTGCAATTGGCAATTTCTTCACTGCTGTACTATCAAGAGAAGGTAGAGTGTACACATTTTCTTGGGGAAGTGAGAGTAGGCTCGGTCATCAAACCGAACCGAACGACTTGGAACCACGGCCATTGACGGGAGCCTTAGAGAACGCTCCCGTTGTTCAAATTGCTGCTGGATATTGCTATCTTCTTGCTCTAGCTTGTCATCCTAATGGCATGTCAGTGTACTCTGTAGGGTGTGGACTAGGTGGGAAGCTCGGTCACGGATCAAGAACGGACGAGAAACACCCACGACTCATCGAACAATTTCAGCTTCTGAATCTTCAGCCAGTCGTGGTCGCTGCTGGTGCTTGGCACGCAGCCATTGTAGGTCGGGACGGTCGAGTTTGTACGTGGGGTTGGGGTCGTTACGGGTGCCTGGGACATGGAAATGAGGAGTGTGAATCTTCTCCCAAAGTTGTGGAAGCATTAAGCAATGTCAAAGCAGTTCATGTTGCTACAGGAGATTACACAACCTTTGTAGTATCGGACGATGGCGACGTGTATTCTTTCGGTTGCGGAGAATCTGCTAGTCTGGGGCATAACAATGGCGTCGCCGCCGCCGCCGCCAATGGAGAGATTAGCCTCACTAACTCAATTTACTGGAATGCACACACCTTCGCACTGACCGAGTCGGGAAAGTTGTATGCATTTGGTGCTGGTGACAAAGGGCAGCTCGGAGTCGAACTTATGGCGAATCAAACCGAAAGGGGAAATCCAGAGCGAGTTGACATTGATCTAAATTAA 1743 48.08 MDATTSETAPIQFHTIPDQSVSSIVTNPASTFPLSKRHCFGESCPGEFPLAANPSIVLHVLTACNLDPKDLAKLEASSYVFRLFGFTSIVVTYSRIDFGCVCVCVLQATCSFFRQPANFAPDYELSISELAALDMCRKRAIFKPMTTEQQQGLKQRCGGSWKLALRFLLAGEACCRREKFLAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEESRPPRLIRLRNSQQIFDLIQRDIHSININGLRVVVLACCCRSLQGIRIIQAAAGSGRTMLISDAGRVYAFGKDSFGEAEYGAQGAQVVTTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGSESRLGHQTEPNDLEPRPLTGALENAPVVQIAAGYCYLLALACHPNGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAIVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNNGVAAAAANGEISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELMANQTERGNPERVDIDLN 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7967712 7970115 + Carg27652-RA Car18g00678 166380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00678 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 388 IPR000408 -
Car18g00678 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 497 IPR000408 -
Car18g00678 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 445 IPR000408 -
Car18g00678 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 196 248 IPR000408 -
Car18g00678 580 Pfam Regulator of chromosome condensation (RCC1) repeat 335 384 IPR000408 -
Car18g00678 580 Pfam Regulator of chromosome condensation (RCC1) repeat 195 230 IPR000408 -
Car18g00678 580 Pfam Regulator of chromosome condensation (RCC1) repeat 282 332 IPR000408 -
Car18g00678 580 Pfam Regulator of chromosome condensation (RCC1) repeat 394 441 IPR000408 -
Car18g00678 580 Pfam Regulator of chromosome condensation (RCC1) repeat 445 494 IPR000408 -
Car18g00678 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 335 IPR000408 -
Car18g00678 580 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 580 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00678 - - - cmos:111449612 957.207
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01809 Car18g00678 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00789 Car-Chr9:4646347 Car18g00678 Car-Chr18:7967712 4.55E-12 dispersed
Car18g00678 Car-Chr18:7967712 Car04g02750 Car-Chr4:21204250 1.50E-11 dispersed
Car18g00678 Car-Chr18:7967712 Car04g01809 Car-Chr4:10507352 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00678 Car_Chr18 FPKM 364.317444 380.118683 338.497528 336.436859 522.827393 562.700562 499.799805 377.783478 392.516632 375.988098