Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00682 ATGGCCATCCTCCTGTTCCGGATTCTCTATATATATACCCTTCACCGAGCAAACTCGCTGCCATTACCATTTCTTCATCTCCCTCTTCCCGCCGGCATGAGTGTCCGATCATGGCTACTCCCCTGCGCCACCGCTACAGCCACCGCCGTCGACTCCAATACGCCGCCTCAATCCTCCTCCTTCTCAATTTCCGACACGTCGGTCAACTCTTCCTCATCGTCGTCGACACCGACTTCCGACACTAGCTGCTCCACTCTCCAAAGCAATCTCTCCCTTCAATCCCAACCGTCCATTCCATCTCTCCAAACTCTCCCCACCGTCACCGATACCGGAAACGTCGCCGTTTCTCAACTTCACCTCGCCTCTTTCAAGCTCCCAATCTCCCATCTCGCCGTCCATGGTCCCCACCTCTATGTCGCCACCGCTCACGAAATCAACGTCTACGATCGATCCACGTACTCCCACGTAGCCTCAATCAACGATCGAGATTCCTCCTCCGGCGCCGTCAAGGGAATCGCCTTTCTAAACGCCCAAATCCTTACTTCCCATCAAGATGGAAAAATCCGCGTCTGGAATTTAACGAATAATCAATTCAAAAAGGTCAACACTCTCCCGACAGTCAACGACCGCCTCCGCCGCTTCATACTCCCGAAAAATTACGTCAACGTCCGCCGTCACAAGAAAGTCCTCTGGATTCAACACGCCGACGCCGTCACTGGACTCGCCGTGAACAGAAATTCATTTTACTCTGTTTCTTGGGATCGGAGTTTGAAAATCTGGCAAGGCTCCGACCACCGCTGCGTCGAGTCCGTCAAGGCAGCGCACGAGGACGCCATAAACGCAGTAGCCGTCTCCGCCGCGGGGATTGTGTACACCGGATCGGCCGATCGGAGAATCAGAAAGCACAAATCGGCGGTGAATGCATTGGCGTTAAACGACGACGGTTCATTGCTGTTCTCCGGCGCCTGCGACCGGTCCGTTCTGGTGTGGGAAAGAGAGGACGGCGCGAACCACATGGCGGTGATCGGAGCATTGAGGGGACACAAAAACGCGATTCTCTGTTTGATCTACGTCTCGGATTTGCTGTTGAGTGGGTCCGCAGATCGGACGGTCAGAGTTTGGCGACGTGTAGGAGATGGGAGTTTTAACTGCTTGTCCGTACTGGAGGGTCACCGGAAACCGGTGAAATCTCTGGTGGTGGTTTCCGACGGCTTGTTAAACGGCATCGTTTCGGTGTGCAGTGGGAGTCTGGACGGTGAACTGAAAGCCTGGAAACTCTCGTTTTCGAATCTTAATGGAATATTAAATTAG 1311 53.78 MAILLFRILYIYTLHRANSLPLPFLHLPLPAGMSVRSWLLPCATATATAVDSNTPPQSSSFSISDTSVNSSSSSSTPTSDTSCSTLQSNLSLQSQPSIPSLQTLPTVTDTGNVAVSQLHLASFKLPISHLAVHGPHLYVATAHEINVYDRSTYSHVASINDRDSSSGAVKGIAFLNAQILTSHQDGKIRVWNLTNNQFKKVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGLAVNRNSFYSVSWDRSLKIWQGSDHRCVESVKAAHEDAINAVAVSAAGIVYTGSADRRIRKHKSAVNALALNDDGSLLFSGACDRSVLVWEREDGANHMAVIGALRGHKNAILCLIYVSDLLLSGSADRTVRVWRRVGDGSFNCLSVLEGHRKPVKSLVVVSDGLLNGIVSVCSGSLDGELKAWKLSFSNLNGILN 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7990836 7992199 + Carg27648-RA Car18g00682 166384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00682 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 374 - -
Car18g00682 436 ProSitePatterns Trp-Asp (WD) repeats signature. 179 193 IPR019775 -
Car18g00682 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 374 IPR001680 GO:0005515
Car18g00682 436 Pfam WD domain, G-beta repeat 383 425 IPR001680 GO:0005515
Car18g00682 436 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Car18g00682 436 Pfam WD domain, G-beta repeat 302 330 IPR001680 GO:0005515
Car18g00682 436 MobiDBLite consensus disorder prediction 50 86 - -
Car18g00682 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 201 IPR001680 GO:0005515
Car18g00682 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 340 IPR001680 GO:0005515
Car18g00682 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00682 - - - csv:101204588 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00459 Car-Chr13:6941088 Car18g00682 Car-Chr18:7990836 6.25E-09 dispersed
Car18g00140 Car-Chr18:755233 Car18g00682 Car-Chr18:7990836 1.57E-07 dispersed
Car18g00682 Car-Chr18:7990836 Car08g00308 Car-Chr8:1972092 2.77E-06 dispersed
Car18g00682 Car-Chr18:7990836 Car06g01113 Car-Chr6:8338280 9.77E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00682 Car_Chr18 FPKM 14.974146 13.544435 0.0 0.402771 3.80735 4.985996 3.54791 0.0 0.0 0.0