Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00685 ATGCTTCAGCATTGTCTTGCTTTAGCATTCCGACCGACATGCATTGATATGTATCACAGCGTAAACCGCCTCGTCTTTCGAGCTAGTATCACCAAGTGTGTCAAGGTTGGTTTAATTGATGAAGCTATCAGGATATTTGATGAAATGACTCAATCGAATTGTCCTGTAACGAGCAGAGACTACAATCGCTTTATTGGTGTTCTGATTAGCCGCTCGCGTTTCGATTTGGCCGAAAGTTATTACTCGAGAATGATACCTCAAGGTTTTTCTCTTACGCCATTTACTTACTCCAGGTTCATTTCTGCTTTGTGTGAAGTTAAGAATTTCGGCCTCATAGCTAGGCTGTTAGAAGATATGAATAGGCTTGGCTATATTCCTGACATTTGGGCTTTTAATATATATTTGAATCTCTTATTCCGTGAAAACTGTTTAGAATTGGCTTTAGAGTTCTTTAACGAAATGGTTTCGAAAGGAAGGGAACCTGATGTTGTAACATACACCATAATAGTTGATAGACTGTGCAAAGCCAAGCAATATGGCCAAGCTGTGGAGTTTTGGCGTTTTATGGTTCAGAAGGGGATTAGTCCAGACATGAAAGCCTGTACGGCTCTTGTTGTTGGGCTCTGCGATGGTGGGAAAGTTGATTTAGCATATGAGCTTATGGTTGGTAAAATGAAGGGTCAGACGAAGTTCAACAATTTGATTTATAATTCTCTGATGAGTGGGTTTTGTAAAGCTGGCCGGATCTCTAAGGCACTGGCCATCAAGTCATTTATGAGTAAGAATGGCTGTGAGCCAGATTTGGTTACCTACAATATTTTGCTGAATTTTTTTTGCGATGGGCTTATGTTGGAGGATGCAGGGGAGTCGATGAAGAAGATGGAGAGGATAGGAATGGAGCCTGATGTGTACAGTTATAATCAACTTCTTAAGGGTCTTTGCAAGGCTAATCGGCTGGATAAAGCATATAGATTGATGAATAAAATGTGGGAGAAAGGGTTGTGTGACACTGTTTCATACAACACTTTGATAAGTGCACTATGCAAAGCATTGGCAACTAGAAAGGCATACAAGCTATTTGAGGAAATGGGTCAGAAAGGCGTTGCTCCAGATGTGGGAACATTTGCAACTCTTATAAAAGCTTTTCTTAGAGAAGGAAGCTCCCATATAGCAAAGAGACTTCTTCATAAGATGACCGAGACAATTCTGTTACCTGATCACATATTTTATACAACGGTCATAGATTATCTTTGTAAGACGGGGAAGATTGAGATGGCTCAAGGCGTCTTTCATGACATGATAGAAATAGGAATCACCCCTGATGTGGTTTCATATAATGCTCTTATAAATGGGCTTTGCAAGGCCTTTAAAGTTCCTGAGGCCATGTTACTGTATGAAGAAATGCAAATGAGAGGATGCTGTCCTGACGAGGTAACTTTCAAACTGATAATTGGAGGACTTTTACGAGAAAAGAATCTTCCTTTAGCTTGTCAGGTCTGGGATCAGATGATGGAGAAGGGCTATACGCTTGACAGATTTCTATCCGAGGCTCTTATCAATGCCATTCAGTCGAGGGATGCTGGTTAA 1587 40.71 MLQHCLALAFRPTCIDMYHSVNRLVFRASITKCVKVGLIDEAIRIFDEMTQSNCPVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEVKNFGLIARLLEDMNRLGYIPDIWAFNIYLNLLFRENCLELALEFFNEMVSKGREPDVVTYTIIVDRLCKAKQYGQAVEFWRFMVQKGISPDMKACTALVVGLCDGGKVDLAYELMVGKMKGQTKFNNLIYNSLMSGFCKAGRISKALAIKSFMSKNGCEPDLVTYNILLNFFCDGLMLEDAGESMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYRLMNKMWEKGLCDTVSYNTLISALCKALATRKAYKLFEEMGQKGVAPDVGTFATLIKAFLREGSSHIAKRLLHKMTETILLPDHIFYTTVIDYLCKTGKIEMAQGVFHDMIEIGITPDVVSYNALINGLCKAFKVPEAMLLYEEMQMRGCCPDEVTFKLIIGGLLREKNLPLACQVWDQMMEKGYTLDRFLSEALINAIQSRDAG 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8140298 8141884 - Carg14513-RA Car18g00685 166387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 332 IPR002885 -
Car18g00685 528 Pfam PPR repeat 298 329 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Car18g00685 528 Pfam PPR repeat 410 438 IPR002885 -
Car18g00685 528 Pfam PPR repeat 30 54 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Car18g00685 528 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 20 527 - -
Car18g00685 528 Pfam PPR repeat family 336 383 IPR002885 -
Car18g00685 528 Pfam PPR repeat family 126 175 IPR002885 -
Car18g00685 528 Pfam PPR repeat family 235 279 IPR002885 -
Car18g00685 528 Pfam PPR repeat family 440 487 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Car18g00685 528 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 20 527 - -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 164 197 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 338 372 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 33 57 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 304 334 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 443 477 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 410 442 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 235 267 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 130 163 IPR002885 -
Car18g00685 528 TIGRFAM PPR: pentatricopeptide repeat domain 478 511 IPR002885 -
Car18g00685 528 Gene3D Tetratricopeptide repeat domain 14 137 IPR011990 GO:0005515
Car18g00685 528 Gene3D Tetratricopeptide repeat domain 138 280 IPR011990 GO:0005515
Car18g00685 528 Gene3D Tetratricopeptide repeat domain 403 528 IPR011990 GO:0005515
Car18g00685 528 Gene3D Tetratricopeptide repeat domain 282 402 IPR011990 GO:0005515
Car18g00685 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00685 - - - cmax:111466483 1044.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00685 Car-Chr18:8140298 Car11g00753 Car-Chr11:4366640 6.24E-32 dispersed
Car18g00685 Car-Chr18:8140298 Car07g00958 Car-Chr7:5428599 6.84E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g620 . . . . . . Bma14g01828 . . Cmo18g00756 . Cma18g00751 . Car18g00685 . Cpe09g00548 . Bhi07g01807 . . . . . . Cla05g02598 Cam05g2789 Cec05g2827 Cco05g2859 Clacu05g2791 Cmu05g2639 Cre05g2755 Cone13ag1092 . . . Lsi04g00608 Csa05g02277 Chy10g00843 Cme10g00587 . . Bda07g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006460 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00685 Car_Chr18 FPKM 9.824696 10.551242 0.0 0.0 0.207483 0.0 0.0 0.0 0.0 0.0