Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00686 ATGGATGAAAAGAGGGTGGCCGGTTGTACTCGTAACGCGTTTTTCCGGTCGGTTTCGTGGTCGGAACGGTCACCGTCGAAGCCCCGTGATAATCGGAGCTTAGTGTCGAATAGTAATAAAGCTCGGTTGTGTTTGCCGCCGCTGCAGCCGCTTTCGATCAGTCGCCGGAGTGTTGAGGAGTGGCCACCGGCGGGTTGTGATGATCTTGGTGTTTGGCCAAACCCAGAAACTCCGAGAGAGGTTGTTGATGATAAGGCTGTGAGGGAATTTGAGTTTAAGAAGGATAAACTTGCGTATTTTGATAAGAAATGCTCGAAAATTCTTGATCATGTGTATTTAGGGAGTGATTCTGTGGCTAAGAATCGAGAGGTTTTGAGGCAGAATGGGATCACTCATGTGTTGAATTGTGTTGGGTTTGTGTGTCCTGAGTATTTCAAGGGTGAATTCGTTTACAAAACTCTTTGGTTGCAAGATACTCCTTCAGAGGATATTACTAGCATTCTCTATGATGTATTTGATTACATTGAAGATGTTTGTGAGCTCGGTGGTCGGGTTTTCGTGCATTGTTTTCAAGGAGTGTCTCGGTCGACTTCTCTTGTAATAGCGTACCTTATGTGGAAGGAAGGTCGGAGCTTTCAGGATGCTTTTCAATCGGTAAAGGCCGCTCGAGGGGTGGCTAATCCGAACTTGGGGTTTGCTTGTCAACTATTGCAGTGCCAGAAGCGGGTTCATGCCCTGCCTGCTAGCCCGGATTCGACTTTGAGGATGTATAGGATGGCTCCTCATTCATCTTATGATCCACTTCATCTTGTACCTAAGATGTTGAACACTCCAACTGTTCGAGGGCTTGATTCTCGTGGGGCATTTGTCGTGCATGTTCCTTCGGCTATCTATGTCTGGGAGGGGGAGAAGTGCGACTCTGTGATGTTGAACTTGGCTAAGGCAGCAGCGTCGCAGATCATTCGATACGAAAAGGCTAGAGGCCCTATCCTTAGCATCAAAGAAGGTGATGAACCATTGGGATTTTGGAAAGCTTTGATGGATGGCCAAAATTTGGCTGATAATTCCAAAGGGCAAGTTCGGAAGGTTGAGGAGTATAATCCAGATTTCGAAATTTTTCACAGGGCGATTTCGGATGGGGTTGTTCCACCTTTCGATATATCTAATACCGATTCGGAAAATTACCTTCCCGTTAGAGAAAATGGGTGGGACACGACCAAAAGCAAGATCGAAAACGAAACTAAAGAAGATATTGTGACATCCTTTTCAGAATTGGATTGTGATACTAAAGGAGCATTTGATGATATGGACATGATGACTGCAAATATTGATGAAGATCCAAATGCACCTGTTTCATCAATTGACCTTGCATCTCCACCACTTTCACCCACAGCCTATTTGTGTGACTCACCTGAATCTTTTGACTGTTTTCCAGCTCGTAGCTTGGATCGGGAAATAGAAGATTCTAAGGTGAGCTCGATCCCAGACGATCCTTTATCGATACCGATTCATCCTCTGGGATCACCCGATTCATTTTCGAGTTTTCAAGGAGGGACTAGTCCAAAGTTCGGCACCAAATCCCCTTCGCTCTCTCCTTCTACATCTGATAACTCGAGTTCATTTACCTTTTCACCATCATCGTCTAATTGGTCCGACTTATCGTATATGTCTTCTCAGCAACCATCACCGTCCGACGTGGATTCAGTACATCCGGCTGTTAAAAACTCTTCCATCATAGATAATTTTTGTTTACACCACAAAGAAACTCATCCTATCTTTGTAGAGTCCTTTCCCTCTTATCCCATGTTAAGGGCAGGAAACACGAATTTGACATCAAGAGGAGCCTCCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTGGGATGTTGCTGCCCTCCATTGAAGAAGCCTGCAAGGTTCAGAGGAAAATAGTTCGGTCATCATCGTTTTCTTTGCTCACCTTAGACGACGATGCATTGGAGATAGCAGGGTGCAGCCAATCCAATAATAAAAGCAGTACTAAAGATCTAAATTTGGACATAGATAGATTTGAGGCTTGCACTGAATTAGAAAACAAGTTTGCAGAAGCAGAAACTCCAATCTTTTACCAGTGGCCTTCAATGAATACAGTGGAGATCAATCAATTTGGGAATCTCAATTCTAGATCAGTGTATATATTGTTTGCACCAGATACAAATTTGGATTCAAACGGCTACAACAACTTATTTATCTGGCTGGGGAGTGAAGTTTTGCATAAAAACGATGACGGTCAACGAATGAGCGACGACAATGAAGATGGACATTTTCACTGGGAGATGATCGGACATATATTCATTAACAATAAGGGAATTCCTAGAGATACCAAAATACAGATAATAAGAGAAGGTGAGGAGCCAGAGAAGTTCCTTGCACATATAAGCCATTCATTACCTCAAAAAACAGAATGTGTTGATCTGTGGTCGGTGAAGACTTGA 2481 43.89 MDEKRVAGCTRNAFFRSVSWSERSPSKPRDNRSLVSNSNKARLCLPPLQPLSISRRSVEEWPPAGCDDLGVWPNPETPREVVDDKAVREFEFKKDKLAYFDKKCSKILDHVYLGSDSVAKNREVLRQNGITHVLNCVGFVCPEYFKGEFVYKTLWLQDTPSEDITSILYDVFDYIEDVCELGGRVFVHCFQGVSRSTSLVIAYLMWKEGRSFQDAFQSVKAARGVANPNLGFACQLLQCQKRVHALPASPDSTLRMYRMAPHSSYDPLHLVPKMLNTPTVRGLDSRGAFVVHVPSAIYVWEGEKCDSVMLNLAKAAASQIIRYEKARGPILSIKEGDEPLGFWKALMDGQNLADNSKGQVRKVEEYNPDFEIFHRAISDGVVPPFDISNTDSENYLPVRENGWDTTKSKIENETKEDIVTSFSELDCDTKGAFDDMDMMTANIDEDPNAPVSSIDLASPPLSPTAYLCDSPESFDCFPARSLDREIEDSKVSSIPDDPLSIPIHPLGSPDSFSSFQGGTSPKFGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYMSSQQPSPSDVDSVHPAVKNSSIIDNFCLHHKETHPIFVESFPSYPMLRAGNTNLTSRGASPSIAERRGSHPPPGMLLPSIEEACKVQRKIVRSSSFSLLTLDDDALEIAGCSQSNNKSSTKDLNLDIDRFEACTELENKFAEAETPIFYQWPSMNTVEINQFGNLNSRSVYILFAPDTNLDSNGYNNLFIWLGSEVLHKNDDGQRMSDDNEDGHFHWEMIGHIFINNKGIPRDTKIQIIREGEEPEKFLAHISHSLPQKTECVDLWSVKT 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8145204 8148703 + Carg14512-RA Car18g00686 166388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00686 826 MobiDBLite consensus disorder prediction 507 542 - -
Car18g00686 826 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 223 IPR000387 GO:0016311|GO:0016791
Car18g00686 826 ProSitePatterns Tyrosine specific protein phosphatases active site. 187 197 IPR016130 GO:0016311|GO:0016791
Car18g00686 826 MobiDBLite consensus disorder prediction 487 542 - -
Car18g00686 826 ProSiteProfiles Dual specificity protein phosphatase domain profile. 103 245 IPR020422 GO:0006470|GO:0008138
Car18g00686 826 Pfam Dual specificity phosphatase, catalytic domain 111 241 IPR000340 GO:0008138|GO:0016311
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00686 - - - csv:101203370 1294.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01803 Car18g00686 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00014 Car-Chr10:76162 Car18g00686 Car-Chr18:8145204 8.40E-20 dispersed
Car11g01624 Car-Chr11:12864460 Car18g00686 Car-Chr18:8145204 6.16E-12 dispersed
Car18g00686 Car-Chr18:8145204 Car19g00829 Car-Chr19:8814792 4.29E-10 dispersed
Car08g01045 Car-Chr8:7135371 Car18g00686 Car-Chr18:8145204 3.02E-20 transposed
Car16g00935 Car-Chr16:7670361 Car18g00686 Car-Chr18:8145204 5.27E-11 transposed
Car18g00686 Car-Chr18:8145204 Car04g01803 Car-Chr4:10336560 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00686 Car_Chr18 FPKM 2.778846 3.534501 2.898688 1.764996 3.55769 3.193077 2.312176 6.470572 6.60275 6.505995