Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00716 ATGTACTCCCGCAGTTTTCGCTGCGAAGGTGCTTTTGGTGCCCTCTCTCACCCCACGCAATTGGTCACTCCTAGCTGGTTAGTGGTTGTCACTTCTATCGACATGTACTCTGCCGTGTTCTTCGTGCAGATGACGTGTACGACACGTGTCTCTTTCTTGCTGGATGAAGGAGCTGCCTCGTCGGATGAAGAGTTGAGCGGAGGAGAGATGGAAGCTGTGGAGGCGGAGACTCAAACCAAAGGCGAGAAAAGGGATCTCAAGGATAAGCTATTACGTAGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACCCTCCTTGAATGGTGGAATGTTCACTATAAATGGCCATATCCCACGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTGGAAGGAGTGGATGAGCTTTCTTCAGGTAGATTCTTCAGAGAGGACTGA 570 47.02 MYSRSFRCEGAFGALSHPTQLVTPSWLVVVTSIDMYSAVFFVQMTCTTRVSFLLDEGAASSDEELSGGEMEAVEAETQTKGEKRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQLEGVDELSSGRFFRED 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8359753 8361545 - Carg14482-RA Car18g00716 166418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00716 189 ProSiteProfiles 'Homeobox' domain profile. 105 168 IPR001356 GO:0003677
Car18g00716 189 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Car18g00716 189 ProSiteProfiles ELK domain profile. 85 105 IPR005539 GO:0003677
Car18g00716 189 Pfam Homeobox KN domain 125 164 IPR008422 GO:0003677|GO:0006355
Car18g00716 189 Pfam ELK domain 85 106 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00716 Car-Chr18:8359753 Car11g00082 Car-Chr11:440410 7.89E-46 dispersed
Car12g00020 Car-Chr12:114752 Car18g00716 Car-Chr18:8359753 1.02E-06 wgd
Car18g00716 Car-Chr18:8359753 Car04g01779 Car-Chr4:10166478 2.80E-79 wgd
Car18g00716 Car-Chr18:8359753 Car05g00025 Car-Chr5:135513 8.59E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5177 PF05920 Homeobox_KN 6.30E-18 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00716 - - csv:101211876 245.358