Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00729 | ATGTCTTCTTCAAACGATACAGCTATTTCTTCATCACATTCTGATTTGGATTCTTCTCCTCCTCCTTCTCCTCCTTCGCCGCAGTCAGATGGTTTATCGTTGATGTCGAATGAAGATGCTTCTGCATCGCCCATTGTTTCATCGAAAATTAAATCTCCGCCTGCCGACGACGGAGGTTCACCGTCTTCCACACCGAAACCAAACGTTGGATCTTCAACGCCGCCCCCGATTGATTCCTCTAATTCAGGTTCATCCAAAGAGAATCCATCGCCACCTCCTGTACCTTCCGCTTCCGCTTCCCCACCGCCATCTCCTACTTTTCCTCCTCCTTCTCCTCTTTTGGTACCTTCACCACCGCCACCACAACTGCCGTCTGAGAGCGGCAGTGATAATCCTCCACCTTCCTCTGTTCCAACAAAAGGCTCTCCGGCATCTCCAGGAAATCCATCTTCTCCAATGCCGGGGAATAATCCTTCTACTCCGACGAATAACGGTGCAGCTTCGGGTTCTAATACAGCCAAGGAGCTTCCACCATCTGAATCGACTGATTCTCCTCCTCAATCAGAAAATACAGTCGTGATTCCTTCACCAGGTGCAAATCCGGCGAGGGGGAAACGAAATCCGAGTCCACCTCAAGAGGCGACTTCTCCCACATCAGACTCTAACATCTTTCAACCTCCCACAACACCATCCACATCCAATAGTACTCTAGACAACTTACCTCAGTCCTCCGACTCAACGCCGGTGGAAACTCCATTAAGGCAATCCAATGCACCATCGTCACCTTCAAGTAGTCAAACAAAAGTTGCAGTAGGCGTTTTAGTAGTTGGAGTTATTGTAATTGTTATGGTTGCCGTAATTTTTATATTCACAAGGAAGAAGAAAAGACGGGGAGACTTGGAGAATGGCCCATACTTGCCTCCTAACAACTTCTGTGAGAAATCAGATGGAAATTACAATCCGGATCAACATAGTGGGAACTCTGGCTCGGCAGAAGGCTTCTATACCCAGGTCCCGCATACTCCTGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGAGACAGAGGCAGTGGAGTGGATTCAGGTGTGATAAACAGTGCTAAGTTCTTTAGCTATGAGGAGTTGATGGAGATTACCTCTGGATTTTCGCGTCAAAACGTTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTTGCTTCCAGATGGGAAGCCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGGCAGGGGGAAAAGGAATTCAAAGCGGAGGTTGAGATTATCAGTCGCGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGGCTCTGAGAATCATAAATTGCTCATCTATGAGTTTGTTCCTAATAGGACTCTTGAGCATCATCTCCATGGCGGCAATGAAGTCCCCGTGTTGGAATGGTCCAAAAGACTCAAAATCGCTTTGGGATCTGCAAAGGGCTTGGCGTATCTGCATGAAGATTGCCATCCCAAGATTATTCACAGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTCGAGGCGAAGGTTGCAGATTTTGGACTTGCAAAACTAACAAATGATGCAAACACCCACGTTTCAACTCGTGTCATGGGGACATTTGGATACATGGCGCCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTTTTCTCATTTGGGGTTGTTCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCTCTCAGCCTCTAGGGGACGAGAGTTTGGTCGAATGGGCTCGACCTCTTCTCCTTCACGCCATTGAAACTGGGAAGTTCGACGGATTAATAGACCTTCGCCTTGGAAAACGTTATGTGGAAAGTCAAATGTTCAGAATGATCGAAGTAGCAGCTGCCTGCGTTCGTCATTCAGCTCCCAAAAGGCCTTGCATGGTTCAGGTGGTGAGAGCTCTGGACATTGAAAGTGACATGTCCGACCTCACCAATGGTGTCAAATTTGGGCAGAGCACTACCTATGATTCTGAACAATACAGTGAAGACATTTCTAACTTCAGGAAACTGGCGTTCGAAGACAGCCCCGACTACGATGGTTACAGTAGCGAACACAATTCCGGAGAAGTGAATGCAACTCGGGAATCACGGAGAAGCCAAAATTACTCGAGTGGTGAATCAGAAACTCGAGCTTTTAAGGGACAAAGTGGCGGCGTAACACACAGTCAACATACTGGACGATAA | 2253 | 47.49 | MSSSNDTAISSSHSDLDSSPPPSPPSPQSDGLSLMSNEDASASPIVSSKIKSPPADDGGSPSSTPKPNVGSSTPPPIDSSNSGSSKENPSPPPVPSASASPPPSPTFPPPSPLLVPSPPPPQLPSESGSDNPPPSSVPTKGSPASPGNPSSPMPGNNPSTPTNNGAASGSNTAKELPPSESTDSPPQSENTVVIPSPGANPARGKRNPSPPQEATSPTSDSNIFQPPTTPSTSNSTLDNLPQSSDSTPVETPLRQSNAPSSPSSSQTKVAVGVLVVGVIVIVMVAVIFIFTRKKKRRGDLENGPYLPPNNFCEKSDGNYNPDQHSGNSGSAEGFYTQVPHTPVGNSFGSQKGTGDRGSGVDSGVINSAKFFSYEELMEITSGFSRQNVLGEGGFGCVYQGLLPDGKPVAVKQLKAGSGQGEKEFKAEVEIISRVHHRHLVSLVGYCGSENHKLLIYEFVPNRTLEHHLHGGNEVPVLEWSKRLKIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDDAFEAKVADFGLAKLTNDANTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPSQPLGDESLVEWARPLLLHAIETGKFDGLIDLRLGKRYVESQMFRMIEVAAACVRHSAPKRPCMVQVVRALDIESDMSDLTNGVKFGQSTTYDSEQYSEDISNFRKLAFEDSPDYDGYSSEHNSGEVNATRESRRSQNYSSGESETRAFKGQSGGVTHSQHTGR | 750 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 8428061 | 8430982 | - | Carg14469-RA | Car18g00729 | 166431 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 29 | 48 | - | - | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 298 | 327 | - | - | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 57 | 87 | - | - | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 701 | 750 | - | - | |
| Car18g00729 | 750 | ProSiteProfiles | Protein kinase domain profile. | 383 | 663 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 704 | 750 | - | - | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 157 | 195 | - | - | |
| Car18g00729 | 750 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 504 | 516 | IPR008271 | GO:0004672|GO:0006468 | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 209 | 267 | - | - | |
| Car18g00729 | 750 | ProSitePatterns | Protein kinases ATP-binding region signature. | 389 | 411 | IPR017441 | GO:0005524 | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 1 | 267 | - | - | |
| Car18g00729 | 750 | Pfam | Protein kinase domain | 384 | 586 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 88 | 128 | - | - | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 313 | 327 | - | - | |
| Car18g00729 | 750 | MobiDBLite | consensus disorder prediction | 136 | 156 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g01766 | Car18g00729 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00723 | Car-Chr4:4191548 | Car18g00729 | Car-Chr18:8428061 | 1.62E-150 | dispersed | |
| Car10g00573 | Car-Chr10:2897136 | Car18g00729 | Car-Chr18:8428061 | 2.62E-163 | dispersed | |
| Car15g00207 | Car-Chr15:1142382 | Car18g00729 | Car-Chr18:8428061 | 7.97E-173 | dispersed | |
| Car18g00729 | Car-Chr18:8428061 | Car18g00985 | Car-Chr18:10354626 | 7.09E-157 | dispersed | |
| Car20g00740 | Car-Chr20:4341924 | Car18g00729 | Car-Chr18:8428061 | 1.71E-86 | dispersed | |
| Car18g00729 | Car-Chr18:8428061 | Car04g01766 | Car-Chr4:10109406 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 89530 | PF00069 | Pkinase | 1.20E-44 | CL0016 | Car | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00729 | - | - | csv:101215732 | 899.042 |