Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00734 ATGGCGGACTCTTCTTCTCCCCCTGCAACCCTCGATTCAAATCCTCAAGCTGCCGAGCCCGAAAACCCCAATCCACAGGCCAAGAAACCTGAATCTGCCGCTTCTTCTTTTCCTCCTACGCAATCGTTACCACCAGCACCGATTTCGGTTGGAATAAACCCTACCTTGCATTCGCCGTTGGTGTCCACGCCGCAACCGCCTCCTTCTTTACCGTATGGCCCGCCGCCCGGTACTGTGGCTGTTCCTCCGACGGCTCCGTCATTTCGGCCGGTGCCTCTCGGAGTTCATCAGTTCTCGCCTATGCCTGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCCGGTGTTAGTTCGGTTCCGGCGCCTGCTCCTGGTATGGCAAGTGGCGTTACGGGAGCTGTTCCTGTTCCAGCGCCACAACAGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCAAATCCGGCGATGAGGCCGTACGCCACTATGCCTAATGGTTTCGCAGCTGCTACTCCTCAAGGAGCATTTCTTCCCCCTGGAGTTCCTCGTTTTGCTTCTCCATTTCCTGGTATGATTCGGACACCTTTTCCTCCACGCCCACCTGGTGCTATGGGCATGATGCCAGGAATGCCACGGCCTCCTGTTCCAGGGATTCCTGGTGTTCGTCCAATCATCCCTCCTGTGGTTAGACCTGCTATTCTCCCAAGTGTCACACCTGCTGAAAAACCACAAACTACAATTTATATTGGCCGAATTGCTCAATCAGTGGAAAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGTTGGAAACGGGCCCAAGATCCTTCAGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTTCGTGCACTACGATTACTGACGAAGTTAAACATTGATGGACAAGAGCTAGTGCTAAAAGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAATTCAAAAAAACTGAAAGAAACACAAGTTTCGGAGACTAAGGAAGAAGAAGCTGATGCAGCGAATGTGGCAAAAAATGAAACTTCAAAGCCCCCTGCAGAGGATTCAAAAGAGGACCGTGATTCAGGGGAAAAGGAAGATCATGACATTGCCTGTTCTGCAGTTTTAAGTGATGAAGATAGAGAGGCTGATCGAGAGGCATCAGAAAAGCTTACAAATGCTCTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTACTGACAACTGCTGATGTTTCTGGAAATTCAAGTGCAGAGCCATCTGCTAAACTGAAAGATGGTGAATATGACGTTGATATTTTGAAAAGTGATGCAGCTGATGATAGAAATGATGATGATTCAACTAGCGACAATAAACAAACTAGTGAGCAGCACGACAAGCCTGAAACAAGCTCACCTGATAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGACAGGGAGCGAGATTTAAAAAGGGACAAGGAGCGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAACGAGCTAGGAAAGAGAGGGAACAAAGAAGAAAGATTGAGGAGATTGAGCGACAGTATGAAGAATGTCTTAAAGAGTGGGAATATCGAGAAAGAGAGAGGGAAAAGCAGAGGCAGTATGAGAAGGAGAGAGAGAAAGAGAAAGAGCGTAAAAGGAAGAAAGAGATATTGTATGATGAAGATGATGAGGATGATGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGATCTAGAGAAAAGGAAGATGATTCAGTTGATAGACAGAGAGAGGAAGAAGAAATTGCCGAGGCCAAAAGAAAGGCCGAGGAGGAACAGCTGCAAAAACTGAGAGATCCACCAAAACTTCTACCTGTTCAGATGATGAATATCAATGAGAAAATTGTTCTTCCTGAAGAACCTGCTAACGAGATTAAATTTTTGACTTCAGAACGTGATTCTGAGCTTGACTCGGGCCGTGAGAATCATATAGGGGATGGGTTTTTACAAAATGGTAGTGGTGATGAACTAAATATAATACCATCAGAGACCCGTCAGAGTGAAGGCTTGCCTGCAAAAAGGTTAGGATTTGGTATAGTAGGTTCCGGAAAACGGACTACTGTACCTTCAGTTTTTCACGAGGAGGATGATGAAGCACAGAAAGAGAAGAAAATGAGGCCACTGGTTCCAATCGATTACTCAGCTGAGGAACTCCAAGCTGTGCAGCCTTCTAGTACTGGGGCTTTGCCACCAAATTTAGCTGCAGCAGCCGAATTTGCAAAACGTATATCAAATGTCAATTCTAAAGAAGAGAAGCCTGACAGTGAAAGGGAGCGAGGAAGGCGTCCCAGTGAAAGATCTAGTCAGCGGGATAGAGACCGAAATGATGAGGATACCTATCGCAGCAAAGATGAGAACAAGACAACAGACAGAGATAGGGAGCGAGACCGTGTTTTGGATAAAGTAAAAACACCAGACAACAAAAAGCTGTTGGATGCGAAACAGTTGATTGATATGATTCCCAAGACAAAGGAGGAATTATTCTCATACGACATAAATTGGGCAATTTATGAAAAGCATGCATTACATGAGAGAATGAGACCGTGGATTTCGAAAAAGATAACAGAGTTTTTGGGGGAAGAGGAAACCACTCTTGTCGATTACATAGTTTCGAGTACTCAGGAACACGTAAAAGCATCTCAAATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTCGTTCTGAAGATGTGGAGAATGCTTATCTTCGAAATAAAAAAGGTAGAAACTGGTCTAGCTTTCAGATCAAAAGCATGA 2907 45.72 MADSSSPPATLDSNPQAAEPENPNPQAKKPESAASSFPPTQSLPPAPISVGINPTLHSPLVSTPQPPPSLPYGPPPGTVAVPPTAPSFRPVPLGVHQFSPMPGTGMLNPSYPNPGVQPPGVSSVPAPAPGMASGVTGAVPVPAPQQMMAYQVPPGQVPNPAMRPYATMPNGFAAATPQGAFLPPGVPRFASPFPGMIRTPFPPRPPGAMGMMPGMPRPPVPGIPGVRPIIPPVVRPAILPSVTPAEKPQTTIYIGRIAQSVENDFMLSLLQLCGPVKSWKRAQDPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEEEADAANVAKNETSKPPAEDSKEDRDSGEKEDHDIACSAVLSDEDREADREASEKLTNALEERLKSRPLPPPPLLTTADVSGNSSAEPSAKLKDGEYDVDILKSDAADDRNDDDSTSDNKQTSEQHDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKIEEIERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQREEEEIAEAKRKAEEEQLQKLRDPPKLLPVQMMNINEKIVLPEEPANEIKFLTSERDSELDSGRENHIGDGFLQNGSGDELNIIPSETRQSEGLPAKRLGFGIVGSGKRTTVPSVFHEEDDEAQKEKKMRPLVPIDYSAEELQAVQPSSTGALPPNLAAAAEFAKRISNVNSKEEKPDSERERGRRPSERSSQRDRDRNDEDTYRSKDENKTTDRDRERDRVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRSKA 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8459238 8465431 + Carg14464-RA Car18g00734 166436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00734 968 MobiDBLite consensus disorder prediction 372 419 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 343 365 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 677 756 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 558 647 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 735 756 - -
Car18g00734 968 Coils Coil 504 553 - -
Car18g00734 968 Coils Coil 338 358 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 790 847 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 558 644 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 448 538 - -
Car18g00734 968 Pfam PWI domain 891 954 IPR002483 GO:0006397
Car18g00734 968 Coils Coil 557 584 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 1 21 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 1 85 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 343 538 - -
Car18g00734 968 MobiDBLite consensus disorder prediction 60 85 - -
Car18g00734 968 Coils Coil 614 641 - -
Car18g00734 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 321 IPR000504 GO:0003723
Car18g00734 968 ProSiteProfiles PWI domain profile. 871 968 IPR002483 GO:0006397
Car18g00734 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 335 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00734 K12822 RBM25, S164; RNA-binding protein 25 - csv:101214372 1050.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01759 Car18g00734 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00734 Car-Chr18:8459238 Car04g01759 Car-Chr4:10077347 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00734 Car_Chr18 FPKM 3.43956 3.911909 3.506778 2.445015 3.714133 1.893638 1.612995 3.427765 1.092895 3.283268