Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00740 ATGACTCGAGTTTACATTGGTAATCTGGATCCACGCGTTTCAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTGTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAGGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCCAAAGGCGGTGGAGGTGGTGGTGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGTTCCCGTGGGGGCTCACGAGGCATTGGAGGTGGCTTGCGTCGTAGTCCTTCTCCTCGGCGCCGCAGGAGTCCAAGTTATGAAAGATATGGTCGCAGGAGTAACAGTCCTCATGGTAAAAGATCTCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGAAGCTACAGCAGATCTCCTCCACTCCGTCATGCTCGCCGTGCTTCACCTTATGCTAACGGAGATTGA 570 51.4 MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRRRRSPSYERYGRRSNSPHGKRSPRRRSITPPKRGRSYSRSPPLRHARRASPYANGD 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8483236 8487109 - Carg14458-RA Car18g00740 166442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00740 189 MobiDBLite consensus disorder prediction 101 115 - -
Car18g00740 189 Pfam Zinc knuckle 99 114 IPR001878 GO:0003676|GO:0008270
Car18g00740 189 MobiDBLite consensus disorder prediction 66 189 - -
Car18g00740 189 MobiDBLite consensus disorder prediction 134 148 - -
Car18g00740 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Car18g00740 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Car18g00740 189 ProSiteProfiles Zinc finger CCHC-type profile. 99 115 IPR001878 GO:0003676|GO:0008270
Car18g00740 189 MobiDBLite consensus disorder prediction 149 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00740 K12896 SRSF7, SFRS7; serine/arginine-rich splicing factor 7 - csv:101213165 290.812
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01749 Car18g00740 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01197 Car-Chr1:11075813 Car18g00740 Car-Chr18:8483236 9.70E-65 dispersed
Car09g00461 Car-Chr9:2566043 Car18g00740 Car-Chr18:8483236 1.61E-62 dispersed
Car18g00740 Car-Chr18:8483236 Car11g01202 Car-Chr11:9765948 9.69E-13 dispersed
Car18g00740 Car-Chr18:8483236 Car04g01749 Car-Chr4:10042770 6.12E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g741 . . . . . Bpe10g00832 . Bma15g00192 . Cmo18g00811 . Cma18g00809 . Car18g00740 . Cpe09g00496 Cpe01g01520 . . . . . . . Cla05g02528 Cam05g2718 Cec05g2749 Cco05g2790 Clacu05g2720 Cmu05g2574 Cre05g2688 Cone13ag1031 Cone19ag1022 . . Lsi04g00534 Csa05g02349 Chy10g00916 Cme10g00510 Blo06g00870 . . . . . . . . . . Cma04g01717 . Car04g01749 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00740 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.142288 0.0 0.401181 0.0