Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00742 ATGTCTCGGAAATCCCAGGGGATGATTTCATTACAATCCATTAAATCCATGCCAGCTAGTTCTCGGTTCATGATTCCGCAAGAAGCTGAAGCTTTGGAAGAGCCTTATAATCGGAATGTGAAAAACATGGAAGCTAATTCGTTAGTTGATGGCGAAAATGGTGCTTCTGGAGTTGATCGACTTCGATCCAGTATGAACAATAGTGACGTGCTGAATGAGGATTCACCGTATAATTTCAATATTAAAACAGTGGAAGAAAGACCCGCGCTGGAAGATGGAGAAGATGGTTCTATGTCTTTACCTTCACCTTCAAATTCGGCTTCACATAGTGAAAGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATGCATCAATCTTGGTTTAAACTTCCAAATGGCGATTGGGATCTTGTAAATATACTGTCAACTACAGGAACAGAATCAGTAGTTTCACTGACTGAAGGAAAGGTGTTAAAGGTGAAAGCTGAAAATTTAATTTCTGCAAATCCAGATATCCTTGATGGCGTTGATGATCTTATGCAACTTAGCTATCTAAATGAACCTTCAGTGTTGTATGATCTTGAGTACAGATATAATCAGGATCTTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGACTTGTATGGAAGTGATTACATTGAAGCATACAGGCGCAAAACGGCTCAGAGCCCGCATGTTTATGCCATTACAGATACAGCCATCAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTGTAATAAGCGGTGAAAGTGGAGCTGGAAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCAGCCCTTGGCGGTGGAAGTGGAATAGAGTTTGAGATATTGAAGACCAATCCCATCTTAGAAGCTTTTGGAAATGCAAAAACTTCGAGAAATGACAACTCAAGCCGCTTTGGAAAATTGATTGAAATCCATTTTAGTGAAACTGGGAGAATCACTGGTGCAAATATTCAAACTTTTTTCCAACAGTCGAGAGTTGTTCAATGCACGGAGGGAGAAAGGTCATACCACATCTTTTATCAACTTTGTAGTGGGGCTCCTCCTGCACTTAAAGAGAGGCTGAACTTGAGAAGAGCGGAAGAGTACAAATATCTCAGCCAGAGCAATTGTTTTTCAATAAATAGAGTAAATGATGCTGAAGAGTTTCGTATTGTCACGGAAGCACTAAATGTCGTCCATATCAGCCAAGAAGATCAGCACAGCGTATTTGCAATGCTTGCTGCTGTGCTGTGGCTGGGAAATGTTTCCTTTAGCGTGATAGACAATGAGAATCATGTGGAAGTCGCGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGATATTGAGGAGCTTAAACTAGCTTTATCAACTCGAAAAATGAGAGTTGGAAATGACAGCATTGTCCAAAAGCTTACTTTACCTCAGGCAATTGACACTCGAGATGCTTTGGCGAAGTCAATTTATGCTTGTTTGTTTGAGTGGTTGGTTGAACAAATTAACAAATCTCTTGCCGTAGGCAAAAGGCGAACTGGAAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTTGATAGGAATAGTTTTGAACAATTCTGCATTAACTATGCAAATGAGAGGTTACAGCAGCATTTCAATCGTCATTTATTTAAGCTCGAGCAGGAGGAATATATTCAAGATGGTATCGACTGGGCAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGACGAGGAGTCTACTTTCCCAAATGCCACAGATATGACCTTTGCAAACAAGCTGAAGCAGCATTTGCGTCGTTCTTCTTCTTTTAGAGGAGAACGAGGGAAAGCCTTTACTGTCTGTCATTATGCAGGAGAGGTCACTTATGATACAACTGGTTTTCTGGAGAAAAACCGGGACTTGCTACATTTAGATTCTATTCAACTCCTATCCTCGTGCTCGTGCCATCTCCCTCAGGCTTTTGCATCCAACATGCTAACTCAATCGGAAAAGTCCATTGGTGGCACTTCACATAAGTCTGGTGGTGCAGAATCCCAAAAACTGAGTGTTGCCAGAAAGTTTAAGGATCAATTATTCCAATTGATACTCCGTCTTGAAAATACGACACCTCATTTCATCCGTTGCATCAAGCCTAACAAACTTCAGTCTCCTGGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAAATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGATTTCCTACTCGGATGTCGCATAAGAAATTTTCTCGAAGGTACGGTTTCCTTCTACAAGAAAGCCTTTCATCGCAGGATCCACTAAGCGTCTCGGTCGCAATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTTCACGGAATTCTCTGTGTTCAAAGCTGTTTTAGAGGGCACCTGGCTCGATGCCACATCAAAGAGCTGAAAAAAGGGATTTCCACTCTTCAGTCATTTGTACGTGGGGAGAAAACTAGAAAAGAGTATGCTATCTTGTTACGAAGGCATAGGGCTGCTATTTCTATTCAGAAGTATCAGAAAGCCAGAATTGCTAGAAAACGTTCGAAGGAGGTTTGTGATGCATCAGTCGTGATACAATCAGTTATCCGTGGTTGGTTGGTAAGAGGATGCTCCGGAAATATAGGATTGATGAGTCCTGGTGGTCTTTCGGGAAATGGATCAGGGGATGTGCTTGTCAAGTCATCATTCCTTGCGGAATTACAACGCCGTGTCATGAAGGCTGAGGCCACTTTGAGAGATAAAGAAGAAGAAAACGACATCCTCCATCAACGCGTTCAACAGTACGAGAACCGATGGTCAGAGTATGAACTGAAAATGAAGTCAATGGAAGAGATGTGGCAGAAACAAATGAGATCCCTGCAATCTAGCCTCTCCATTGCAAAGAAAAGCTTATCAGTTGATGATTCAGATAGAAATTACGACGCATCAATCAATGCAAGCCACGAAAGAGGATACAGTTGGGAATTGGGTACCAACAACACAACTAATGAAATCAATGGAGTAAGACCAATGAATGCAGGTCTCAGTGTCATTAGCCGATTAGCCGAAGAATTCGACCAACGAAGTCAAGTCTTCGGCGATGATGCAAAGTTCTTAGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTATCGACCCAGATAGGGAATTCAGAAGGTTGAAACAAATGTTTGATGCATGGAAGAAAGATTACGGGGGACGACTACGCGAAACGAAAGTGATTTTAAATAAGATCGGGAATGACGGTGCCATGGATAGAGTGAAAAGGAAATGGTGGGGAAGGAGGAACAGCACAAGGATATAG 3513 41.53 MSRKSQGMISLQSIKSMPASSRFMIPQEAEALEEPYNRNVKNMEANSLVDGENGASGVDRLRSSMNNSDVLNEDSPYNFNIKTVEERPALEDGEDGSMSLPSPSNSASHSESRWGDTSSYTPRKMHQSWFKLPNGDWDLVNILSTTGTESVVSLTEGKVLKVKAENLISANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDLIYTKAGPVLVAINPFKKVDLYGSDYIEAYRRKTAQSPHVYAITDTAIREMIRDEVNQSIVISGESGAGKTETAKIAMQYLAALGGGSGIEFEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGRITGANIQTFFQQSRVVQCTEGERSYHIFYQLCSGAPPALKERLNLRRAEEYKYLSQSNCFSINRVNDAEEFRIVTEALNVVHISQEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEVAEDEGLQTVAKLIECDIEELKLALSTRKMRVGNDSIVQKLTLPQAIDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNATDMTFANKLKQHLRRSSSFRGERGKAFTVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQAFASNMLTQSEKSIGGTSHKSGGAESQKLSVARKFKDQLFQLILRLENTTPHFIRCIKPNKLQSPGLYEQGLVLQQLKCCGVLEVVRISRAGFPTRMSHKKFSRRYGFLLQESLSSQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSCFRGHLARCHIKELKKGISTLQSFVRGEKTRKEYAILLRRHRAAISIQKYQKARIARKRSKEVCDASVVIQSVIRGWLVRGCSGNIGLMSPGGLSGNGSGDVLVKSSFLAELQRRVMKAEATLRDKEEENDILHQRVQQYENRWSEYELKMKSMEEMWQKQMRSLQSSLSIAKKSLSVDDSDRNYDASINASHERGYSWELGTNNTTNEINGVRPMNAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASIDPDREFRRLKQMFDAWKKDYGGRLRETKVILNKIGNDGAMDRVKRKWWGRRNSTRI 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8498004 8511500 + Carg14456-RA Car18g00742 166444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00742 1170 Pfam Myosin head (motor domain) 178 835 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car18g00742 1170 ProSiteProfiles IQ motif profile. 851 878 IPR000048 GO:0005515
Car18g00742 1170 Pfam IQ calmodulin-binding motif 874 892 IPR000048 GO:0005515
Car18g00742 1170 Pfam IQ calmodulin-binding motif 853 870 IPR000048 GO:0005515
Car18g00742 1170 Pfam IQ calmodulin-binding motif 924 938 IPR000048 GO:0005515
Car18g00742 1170 ProSiteProfiles Myosin motor domain profile. 176 847 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car18g00742 1170 MobiDBLite consensus disorder prediction 98 119 - -
Car18g00742 1170 Coils Coil 967 1015 - -
Car18g00742 1170 MobiDBLite consensus disorder prediction 91 119 - -
Car18g00742 1170 ProSiteProfiles IQ motif profile. 872 901 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00813 Car-Chr9:4925737 Car18g00742 Car-Chr18:8498004 0 dispersed
Car16g00591 Car-Chr16:3709758 Car18g00742 Car-Chr18:8498004 0 dispersed
Car18g00742 Car-Chr18:8498004 Car10g00670 Car-Chr10:3442085 0 dispersed
Car18g00742 Car-Chr18:8498004 Car04g01353 Car-Chr4:7834978 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00742 - - csv:101222101 2061.19