Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00779 ATGGAGGAGACGAAGCCATCAGCTACAAATAATTGCCATACCGATGGCGAACCAGACACTGTTGAAGTTCAATTCACAGAATTGTGTCAGAATGGATTACATCTGGACGAGAGTTGTTGTAATCAAGCGTTGAAGTTATTTAGAGAAACCAAGCACCTTTTGGTGGCGAATATATCAGCAATTGGGAGTGGAATTCCTGAAGAAGCCGAACGTTTTTGGTCTGCTTTTGTTTTATATTCTGTGAAGAGGCTGAGAGATAAGGATCCAGAGAGTTCACATTCAGGACCTGAGAACAATAGCTTCACTTTATGTCATATATTGAGAATTTGCAAGCTGAATATTGTAGAATTTTTTAAAGAGCTGCCTCAGTTTGTTGTTAAAGCCGGTCCAGTATTGAGTAATATCTATGGTGCGGATTGGGAAAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTTGTGCATTTGAGCCTCTTAAGCAAGTACTATAAGCGTGTCTACCAAGAATTCTTCTCCACCAGTGATGCTAATGTTGACAAGCAGTCAGCTAAATCCTGCCATACTGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTGTTTTTGGCACTTCGTGTACATGCTTTCAGTCGTTTTAAGGACTTGGTGACCTGCACCAATGGTTTGGTTTCCATTTTGGCTATATTAATTCTTCATGTTCCTGTTCGTTTCAGAAACTTCAACATTCTTGACTCTGAACGCTTCGTTAAGAAAGGAGGAAAAGGAGTGGACCTTCATAGATCACTTTGTAATGTCTATGACACCTCGGAGGAAGAACTGAGGGAAGTAATGGAGAAGGCAAATAGTTTGATAGAAGACATTTTGAAGAAGAAGCCTTGTTTGGCTTCTGAGTGTAACAGTAAAAGCTTGGAGAATATCGACACTGAGGGTTTGATATACTTTGAAGACTTAATGGAGGAGTCATCTCTTTCATCCAGTTTAGAAATTCTAGAAAAGGACTATGAAGATGCAATTCGTAATAAAGGTGAGCTTGATGAGCGGGTGTTTGTTAATGACGAAGATAGTTTACTTGGGTCAGGCAGCTTGTCAGCAGGTGCTGTTACAATGAGTGGCATCAAGAGGAAGTTTGACTCAATGGGCTCACCTGCAAGGATGATAACTAGTCCAATGTCTCCACTTCGCTCTCCTTCACATGTTAATGGCACTCTTAATAGTGGCAATGCAAAACTTGCTGCCACACCTGTTAGCACAGCTATGACTACAGCAAAATGGCTCAGAACTGTTATTTCTCCACTTCCAGCAAGACCTTCACCAGAGATGGAGCGCTTTTTGGCTTCATGTGATAGAGATGTAACTAATGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTAGGAGAGCGTTGTATACCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATTTGGGCAGAACAGCGACGACTAGAAGCACTGAAGTTATATTATAGAGTTCTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCACAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCCACACATAAAACTGTTACAATGTTGTTTCCTGCAGTACTGGAGAGAACTGGCATTACAGCTTTTGATCTTAGTAAGGTGATAGAAAGTTTCATTAGACATGAAGAATCACTTCCTAGAGAATTGAGGCGACATCTTAATTCGTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCGTCAATGTATAACTCCCTGATTGTTGCTAAACCTTCCCTTGCTGCTGAAATAAACCGTATGGGTTTATTAGCTGAACCCATGCCATCTTTGGATGCGATTGCTGTTCAAATTAACTTTTCTGGTAGTGGGGTATCAACCATGCCGATTCCGCAAAAGCATGAGAGTTTGCCAGGTCAGAATGGGGATATTAGGTCACCAAAAAGATTGTGCACAGACTTAAGAAGTGTTCTAGTGGAACGGAATTCCTTTACTTCTCCAGTGAAGGACCGTCTCCTGGCGTTCAGTAATATTAAGTCTAAGCTTCTACCTCCTCCTTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCTGGAGGAGGTGGCGAAACGTGTGCTGAAACTGGAATTAGCATATTTTTTAGCAAGATCGTCAAGTTGGCTGCTGTTAGAGTAAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACAGATACTCAGTCAAAAGGCATCATTATTATTTAATCGTCACATTGACCAGATCATCCTTTGTTGTTTCTATGGCGTTGCAAAGATATCTCAATTGAGCCTCACGTTTAGGGAAATCATTTACAACTACAGGAAGCAACCACAATGCAAGCCACAGGTCTTTCGCAACGTGTTTGTCGATTGGTCTTCAGCACGTCGTAATGGGAGATCTGGACAGGATCATGTGGATATAATTACGTTCTACAATGAAATATTTATTCCGTCTGTAAAACCTTTGCTTGTTGAGATTGGCCCAGCTGTTTCGACCATGAAAACCGACAGAGTTCCTCAAGTTATCAATAATAGTGATGCACCTTGTCCTGGTTCACCTAAGATATCTCCTTTTCCAAGTCTTCCCGATATGTCTCCAAAGAAAGTATCTTCAGCACATAATGTCTATGTCTCTCCGTTAAGATCATCAAAGGTATTTGTATATTCATGCATTCGATTCTGCGTTTCTTTTTTTCTCTCTACTCCGCTGAATTGGTCTTGTTTTCTATATCTTATCGAGTCCATATTGCACCGTTGA 2895 41.17 MEETKPSATNNCHTDGEPDTVEVQFTELCQNGLHLDESCCNQALKLFRETKHLLVANISAIGSGIPEEAERFWSAFVLYSVKRLRDKDPESSHSGPENNSFTLCHILRICKLNIVEFFKELPQFVVKAGPVLSNIYGADWENRLEAKELQANFVHLSLLSKYYKRVYQEFFSTSDANVDKQSAKSCHTGYLSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILILHVPVRFRNFNILDSERFVKKGGKGVDLHRSLCNVYDTSEEELREVMEKANSLIEDILKKKPCLASECNSKSLENIDTEGLIYFEDLMEESSLSSSLEILEKDYEDAIRNKGELDERVFVNDEDSLLGSGSLSAGAVTMSGIKRKFDSMGSPARMITSPMSPLRSPSHVNGTLNSGNAKLAATPVSTAMTTAKWLRTVISPLPARPSPEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIPGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPSLAAEINRMGLLAEPMPSLDAIAVQINFSGSGVSTMPIPQKHESLPGQNGDIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGISIFFSKIVKLAAVRVNGMVERLQLSHQIRENVYCLFQQILSQKASLLFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSVKPLLVEIGPAVSTMKTDRVPQVINNSDAPCPGSPKISPFPSLPDMSPKKVSSAHNVYVSPLRSSKVFVYSCIRFCVSFFLSTPLNWSCFLYLIESILHR 964
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 8791322 8797173 + Carg14419-RA Car18g00779 166481
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car18g00779 964 Coils Coil 328 348 - -
Car18g00779 964 Pfam Retinoblastoma-associated protein B domain 739 866 IPR002719 GO:0005634|GO:0051726
Car18g00779 964 Coils Coil 267 291 - -
Car18g00779 964 Pfam Retinoblastoma-associated protein A domain 414 615 IPR002720 GO:0005634|GO:0051726
Car18g00779 964 Pfam Domain of unknown function (DUF3452) 97 233 IPR024599 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00779 Car-Chr18:8791322 Car04g01394 Car-Chr4:8085227 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5181 PF01858 RB_A 4.10E-64 CL0065 Car TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00779 K04681 - csv:101219810 1683.69