Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00780 ATGGATCAGTTTCCCAAAGAACTCGACAGAGAAGTATGCAACATGAACAAGATTGAACGAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGATGTACAAGACGACTGGGACGATTGGAATGCAGATGAGGAAGAAGGTGAAGAAGGATTTGACTCGAGTTTTCTGTGTTTGTTCTGCACATCGAAGTATAATGACTGCGCCACGCTGCTCAACCACTGCAACTCGGTTCATAATTTTGATTTTCACGGCATTAGGAAGTGTCTGGGTTTAGACTTTTATGGTTCGTTTAAAATTATCAACTACATACGATCTCAGGTAGCAGAAAATAGGTGTTGGAGCTGTGGTTTCTTGTGTCAATCAAGCCAAGATTTACAGAACCATTTGCACAAAACACTCAATCTCAATGAAATCAAGGCTCTTTGGAATGATGATAAATACCTGAAACCCTTCAGTGAAGATGATCCCCTCTTGTACAGTTTTGCAGAAGACGAAGAGGATGATGACATTTCACCTATCACCAACAATCTACAGAGGAATACAGATACCAATGGAGGTAATTGCAATGTTGATGAAATGAATAGAGCAAGTCTTCCATTTAATCTTAACCGAAGCAAGGAACATGAAATGGCAGATTGTAGTTCTTCTTCACATGGTTATTTGAATACTCCAATTAACTTAGAGGCCGTGATTGAGAATACCGTGAAAGCCACAGAGACCTTGGAATTGAACGATAAGATGCAGGAAGACGATCGATTAAAAATAACCAGAAGAAATTTTTTTTCGAAGGATATCAAGAATGTAAATGAAAGCTACTTTGGTTCATATAGCTCTTTTGGCATACACAGAGAGATGTTAAGTGACAAGGTCAGAATGGATGCTTATATGCAAGCTATTTTGCAAAACCCATCTCTCTTCCACAATGCAGCTGTGATGGATGTGGGCTGTGGAACAGGCATACTTAGTCTCTTTGCTGCAAAAGCGGGTGCATCAAGAGTTATTGCTGTTGAAGCAAGTGAAAAGATGGCAGCAGTGGCTACTCAAATTGCAAAAGATAACGGCCTCTTGCGGAATAGGAAACAGGGTGGGGATTGTGGCATGTCAAGTGGGACTGTTGAAGTCGTTAATGGTATGGTAGAAGAACTTGATAAGAACATAGAGATTCAGCCTCACAGTGTTGACGTATTATTGAGTGAATGGATGGGCTATTGCTTGCTGTATGAGTCAATGCTCAGTTCAGTGCTCTTTGCAAGGGATCGTTGGTTGAAGCCTGGAGGTGCCATCTTACCAGATACTGCCACAATTGTAATATCTTCTCTATCTACTTTTCAGCTTGTTGCAGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTACGGTTTCAATATGTCTTGTGTAGGGAAGGAACTTGTAGAGGATGCTGCCAAAGGTCCCATCGTCGACACTGTGGAGGCTAACGATTTAGTTACTAGTGCAGCAATACTTCATACTTTTGATCTAGCAACTATGCATGCTGACGAAGTAGACTTCACTGCAAGTACAGAGTTGGAACCAAATTTGCATAATCCTTCAAGCAAATCAGAAAACGGTGAAATTGAAACATCTTGGTGTCATGGAGTTGTCTTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAAGAATCACCGGCTGTTCTATCTACATCCCCATACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCAGAGAACCAATTGCTATAACATCAAGCAAATCTGCCACCAACAAATCAGCAACAGTGGGCAGCCTTGCCTCCCCTGCTATCAAAGTTCATTTGCGCCTTAGCATTGTCCGTGCGCCCGAACATCGAAGCATTGACATTTCACTCGAGACTACTGGGATTGCGGGTGATGGTAGGAAGCACCACTGGCCCGTACAACTTTTCACACTAAGATAA 1965 41.93 MDQFPKELDREVCNMNKIEREEEEEEEEEEEEEDVQDDWDDWNADEEEGEEGFDSSFLCLFCTSKYNDCATLLNHCNSVHNFDFHGIRKCLGLDFYGSFKIINYIRSQVAENRCWSCGFLCQSSQDLQNHLHKTLNLNEIKALWNDDKYLKPFSEDDPLLYSFAEDEEDDDISPITNNLQRNTDTNGGNCNVDEMNRASLPFNLNRSKEHEMADCSSSSHGYLNTPINLEAVIENTVKATETLELNDKMQEDDRLKITRRNFFSKDIKNVNESYFGSYSSFGIHREMLSDKVRMDAYMQAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLLRNRKQGGDCGMSSGTVEVVNGMVEELDKNIEIQPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATIVISSLSTFQLVAGFGVGGTSLPFWENVYGFNMSCVGKELVEDAAKGPIVDTVEANDLVTSAAILHTFDLATMHADEVDFTASTELEPNLHNPSSKSENGEIETSWCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFREPIAITSSKSATNKSATVGSLASPAIKVHLRLSIVRAPEHRSIDISLETTGIAGDGRKHHWPVQLFTLR 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8799628 8803229 - Carg14418-RA Car18g00780 166482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00780 654 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 271 614 IPR025799 GO:0016274|GO:0018216
Car18g00780 654 MobiDBLite consensus disorder prediction 1 19 - -
Car18g00780 654 MobiDBLite consensus disorder prediction 1 47 - -
Car18g00780 654 MobiDBLite consensus disorder prediction 20 47 - -
Car18g00780 654 ProSitePatterns Zinc finger C2H2 type domain signature. 59 80 IPR013087 -
Car18g00780 654 Coils Coil 8 38 - -
Car18g00780 654 MobiDBLite consensus disorder prediction 172 192 - -
Car18g00780 654 MobiDBLite consensus disorder prediction 175 192 - -
Car18g00780 654 Pfam C2H2 type zinc-finger (2 copies) 59 133 IPR041661 -
Car18g00780 654 Pfam Methyltransferase domain 313 428 IPR041698 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00631 Car-Chr10:3213299 Car18g00780 Car-Chr18:8799628 1.01E-64 dispersed
Car11g00562 Car-Chr11:3014542 Car18g00780 Car-Chr18:8799628 2.03E-64 dispersed
Car15g00748 Car-Chr15:4195721 Car18g00780 Car-Chr18:8799628 4.05E-52 dispersed
Car15g01028 Car-Chr15:8024384 Car18g00780 Car-Chr18:8799628 1.51E-07 dispersed
Car17g00297 Car-Chr17:1851086 Car18g00780 Car-Chr18:8799628 2.35E-35 dispersed
Car18g00780 Car-Chr18:8799628 Car04g01395 Car-Chr4:8092744 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00780 K11436 - csv:101215999 955.666