Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car18g00793 | ATGTCATCTGCAAATCCTTATTTTGATGATGTTCGGACGAAACCGGAGGTAATCGATCCTCCCCAAGATGAGGACATGATGGATGTTAGCAAAAGTGTTAGTGATCCTACTCGAAATGGAGGAAAGCCTAATGTAGCTGTCTCTAGCAGCGTTCGTGAGCTGTTGGAGTGTCCTGTTTGCTTGAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACATTGTGTTCGGGTTGCAAGCCTAGGGTGCACAACCGGTGCCCGACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAAGTGGCTGCATCTTTGGAACTTCCATGTACATATCAAACCTTTGGGTGCGCGGGCATATACCCGTACTATAGCAAGCTGAAACATGAATCTCAATGTGCATATCGACCCTATAACTGTCCGTATGCGGGGTCGGAATGCACAGTTGTTGGTGATATTCCATTTTTGGTAGCACACCTAAAGGATGATCACAAAGTCGACATGCATAATGGGAGCACTTTCAATCATCGATACGTCAAGTCAAACCCGCAAGAGGTCGAAAATGCTACCTGGATGCTAACGGTTTTCAGCTGTTTTGGTCATTATTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTATATAGCCTTCTTGCGCTTCATGGGTGACGATAACGAGGCAAAGAACTACAGTTATAGCCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTGCGAGACAGCTTTGACGGGCTTATTATCCAACGAAACATGGCTCTGTTCTTCTCGGGCGGAGATCGGAAGGAATTGAAGCTGAGGGTAACTGGTAGGATTTGGAAGGAGCAGTGA | 918 | 46.73 | MSSANPYFDDVRTKPEVIDPPQDEDMMDVSKSVSDPTRNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCTYQTFGCAGIYPYYSKLKHESQCAYRPYNCPYAGSECTVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGHYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 9035299 | 9039771 | + | Carg20672-RA | Car18g00793 | 166495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car18g00793 | 305 | Pfam | Seven in absentia protein family | 99 | 298 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Car18g00793 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
| Car18g00793 | 305 | MobiDBLite | consensus disorder prediction | 12 | 31 | - | - | |
| Car18g00793 | 305 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Car18g00793 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00093 | Car-Chr3:1197234 | Car18g00793 | Car-Chr18:9035299 | 6.94E-166 | dispersed | |
| Car04g01415 | Car-Chr4:8213940 | Car18g00793 | Car-Chr18:9035299 | 0 | dispersed | |
| Car04g02137 | Car-Chr4:17393376 | Car18g00793 | Car-Chr18:9035299 | 0 | dispersed | |
| Car07g01244 | Car-Chr7:7682102 | Car18g00793 | Car-Chr18:9035299 | 4.62E-169 | dispersed | |
| Car18g00793 | Car-Chr18:9035299 | Car18g01246 | Car-Chr18:11869814 | 3.58E-165 | dispersed | |
| Car18g00793 | Car-Chr18:9035299 | Car15g00770 | Car-Chr15:4362429 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car18g00793 | K04506 | - | csv:101205198 | 623.624 |