Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00794 ATGTCGTTGAAGTTGCACCATATTGATCTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTGAATGATATCTCAGCTCAGTCCACAAATAAGTACTGTGCAGATTGTGGATCTCCAGACCCAAAATGGGTATCGTTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGGAGCCTTGGAGTGCACATATCCAAGGTTCTTTCAGTGAAGTTAGATGATTGGACTGATGAACAAGTTGAGGCTTTGATGAGTGCTGGTGGAAATACTGCTGTAAACAAGAAGTATGAAGTTTACATCCCAAAAGGCAACAGAAAACCTAAGCCAGATTCCTCCATAGAGGATCGTCTAGATTTTATAAGGAAAAAATATCAGCTGCTGCAATTTGCAAGCTTTGATGACCAGTTTTTCTGTGCTTTTCCACCCCCGGAGAAGAGAACTTCTAAGGACAATGGAAACCAAGAAAAGCGAAATTATGATAAACAACCAACAAAAAGTCGAATTGGAAATGCATTCCGGAATAGCTGGGGAAGAAAAGATTCTGAACGTAGGAGCTGCAAGAAGGGAAATTCATTGGTGTTAAGCAATTCAATGGCAGGTATGGTTGAATTCATTGGTTTAGTTAAGGTGAACGTGGTTAGAGGAACCAATTTAGCTGTGAGGGACGTCATAACGAGCGATCCGTATGTAATTCTCTCGTTGGGGAATCAATCAGTGAAGACTCGTGTTATAAAGAGCAGTTTGAACCCAGTCTGGAATGAAAGCCTAATGTTGTCTATTCCAGATTTCGTTCCTCCATTAAGGGTGCTTGTATATGACAAAGATACGTTTTCAACCGATGATTTCATGGGTGAAGCAGAAATTGATATCCATCCGCTGCTCTCCGCAGCCCAAGCTTGTGAGAAGTCCACAGCCTGTGAACCCATGCAGCTAGCAAATTGGGTTGCAGGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTGGATGGGAAGCCTCGACAAGACGTCTCCTTGAAGCTGCAGAACGTCGAGAGGGGCGTGCTGGATATGGAGCTTGAATGTGTTCCCCTTTCTCAGTAG 1095 43.74 MSLKLHHIDLKGGSGTQKRLNDISAQSTNKYCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVEALMSAGGNTAVNKKYEVYIPKGNRKPKPDSSIEDRLDFIRKKYQLLQFASFDDQFFCAFPPPEKRTSKDNGNQEKRNYDKQPTKSRIGNAFRNSWGRKDSERRSCKKGNSLVLSNSMAGMVEFIGLVKVNVVRGTNLAVRDVITSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFVPPLRVLVYDKDTFSTDDFMGEAEIDIHPLLSAAQACEKSTACEPMQLANWVAGKENTLAKDGIISLVDGKPRQDVSLKLQNVERGVLDMELECVPLSQ 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9040590 9044207 + Carg20673-RA Car18g00794 166496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00794 364 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 364 IPR044518 GO:0005096|GO:0005543
Car18g00794 364 CDD ArfGap 20 126 - -
Car18g00794 364 ProSiteProfiles C2 domain profile. 190 306 IPR000008 -
Car18g00794 364 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Car18g00794 364 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 8 364 - -
Car18g00794 364 MobiDBLite consensus disorder prediction 150 165 - -
Car18g00794 364 SMART C2_3c 209 304 IPR000008 -
Car18g00794 364 Gene3D Arf GTPase activating protein 6 138 IPR038508 -
Car18g00794 364 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Car18g00794 364 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Car18g00794 364 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Car18g00794 364 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Car18g00794 364 Pfam C2 domain 209 301 IPR000008 -
Car18g00794 364 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Car18g00794 364 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Car18g00794 364 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 205 300 IPR035892 -
Car18g00794 364 MobiDBLite consensus disorder prediction 145 185 - -
Car18g00794 364 CDD C2_ArfGAP 207 351 - -
Car18g00794 364 Gene3D C2 domain 206 361 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01414 Car-Chr4:8209689 Car18g00794 Car-Chr18:9040590 0 dispersed
Car04g02140 Car-Chr4:17411312 Car18g00794 Car-Chr18:9040590 1.29E-121 dispersed
Car18g00478 Car-Chr18:3183455 Car18g00794 Car-Chr18:9040590 7.13E-81 dispersed
Car18g00794 Car-Chr18:9040590 Car11g00289 Car-Chr11:1584944 7.87E-38 dispersed
Car18g00794 Car-Chr18:9040590 Car15g00768 Car-Chr15:4349247 2.75E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00794 K12486 - csv:101221541 639.417