Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00828 ATGGGTCCATCGGGGAAGGAGCTGAAAGACATGGTGGTGAGTCAAGTGGGGGAGTCTTTGAGGGAGATATCGGGGCTTCCTGAGTATAACGGCATATGCAAGAAGGTGTATGGGGATTTGATTCGAAGGGTGAAGCTGTTAAGCCCTTTGTTTGAGGAATTGAGAGATGGAGATGAAGAACTTGAATTAGATGTTCTTAAGGGTTTGGAGTTGCTGAAAATTGCTTTGGATTCTGCTGTAGAGCTTCTTAGATCGGTCAGCCGAGATATTGAGGCAGCACTCAGCAAGCTTCCCATCAACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACCGAGCTCGTTCATGCCCAATTCAGACGAGCGAAAGAGAGAGTAGGTTCAGCTGATGCAGAGTTAGGCAAGGATTTAGTCATATTAGAGGAAGAAAAAGATCCTGACCCTGCAATATTGAAAAGAGTTTCTGAAAAACTGCATCTTCGGAGTATAAACGATCTGAAGAAAGAGTCGTTAGCGATCCATGAGCTGGTGATCTCGATCGATGGAGGAGACCCGGGGGATGTTTTTGGTAAACTGTCGTCCATTTTAAAGAAGTTGAAGGATTATGTACAATCAGAAAACCCGGAAGTTGAAACTTCTCAAGATGAAAAAAGTACGACTATTAAACACAGATCTCCTGTCATCCCCGACGATTTCAGGTGCCCCATATCTCTTGAATTAATGAGGGATCCCGTCATTGTCTCGACTGGGCAGACGTACGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGGCACAAAACCTGTCCAAAAACTCAGCAAGCTTTACAACATACAGCCTTAACACCAAATTATGTCTTGAAGAGCTTGATTTCTTTGTGGTGTGAGAACAATGGCGTTGAATTGCCAAGGAAGCAAGGTAACTGCAGAAGCAAGAAACCCGGAAGCAGTATTTCAGACTGCGATCGGGCTACCATCGATGCATTACTGCTAAAACTGGTTAATGGATCTCCAGAACAGAAAAGATCAGCTGCTGGCGAGCTCCGACTACTAGCGAAGAGGAATTCCGATAACAGAATTTGTATCGCGGAGGCGGGAGCCATTCCGTTCCTCGTCGAACTATTATCCTCAAATGATACTAGGACTCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATTGTCGATCTTCGAGCCATTCCTGCTATTGTCGAAGTACTGAAAAATGGCAGCATGGAAGCAAGGGAAAATGCAGCTGCGACCCTTTTCAGCTTATCTGTGATAGACGAGAACAAGGTCGCCATCGGAGCAGCTGGGGCGATTCCTGCTCTCATAAGCTTGCTTTGTGAAGGTACTCCCAGAGGAAAGAAGGATGCTGCTACTGCTATCTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGGGCTTTAAGAGCAGGCATTGTGACTCCACTCATGGGATTTCTGAAAGACACTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGGTAGCAATAGGGCAAGCCGAGCCGATGACGGTTCTGTTAGAGTTCATCAAAACTGGTTCGCCACGGAACCGGGAAAACGCTGCAGCCGTGCTGTGGTCACTTTGCAGTACCGATTTCGAGCAGTTGAAGCTAGCTAGGGAGCATGGTGCTGAAGAGGCACTGAAAGAAGTATCCGAGAATGGCACAGACAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGACCATCTTCACCCTTGTAA 1830 46.34 MGPSGKELKDMVVSQVGESLREISGLPEYNGICKKVYGDLIRRVKLLSPLFEELRDGDEELELDVLKGLELLKIALDSAVELLRSVSRDIEAALSKLPINKLGISDEVREQTELVHAQFRRAKERVGSADAELGKDLVILEEEKDPDPAILKRVSEKLHLRSINDLKKESLAIHELVISIDGGDPGDVFGKLSSILKKLKDYVQSENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALQHTALTPNYVLKSLISLWCENNGVELPRKQGNCRSKKPGSSISDCDRATIDALLLKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARALRAGIVTPLMGFLKDTGGGMVDEALAILAILATHHEGKVAIGQAEPMTVLLEFIKTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSSPL 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9305016 9307800 + Carg20707-RA Car18g00828 166530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00828 609 ProSiteProfiles U-box domain profile. 227 301 IPR003613 GO:0004842|GO:0016567
Car18g00828 609 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515
Car18g00828 609 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 408 IPR000225 GO:0005515
Car18g00828 609 Pfam U-box domain 228 298 IPR003613 GO:0004842|GO:0016567
Car18g00828 609 Pfam Armadillo/beta-catenin-like repeat 438 476 IPR000225 GO:0005515
Car18g00828 609 Pfam Armadillo/beta-catenin-like repeat 355 394 IPR000225 GO:0005515
Car18g00828 609 Pfam Armadillo/beta-catenin-like repeat 396 435 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01459 Car18g00828 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00541 Car-Chr1:3209827 Car18g00828 Car-Chr18:9305016 0 dispersed
Car13g00102 Car-Chr13:732289 Car18g00828 Car-Chr18:9305016 0 dispersed
Car15g00890 Car-Chr15:5383216 Car18g00828 Car-Chr18:9305016 1.14E-118 dispersed
Car18g00828 Car-Chr18:9305016 Car20g00358 Car-Chr20:2013808 0 dispersed
Car18g00828 Car-Chr18:9305016 Car04g01459 Car-Chr4:8467132 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00828 - - csv:101221065 1000.35