Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00844 ATGCATGTAAGATGGCAGCGTATAAATATCAACGTAAATGATCACACGCAAAGACACATCCTCTGTGATTCACAGGAACGTGATCGAGAGTATGCTGCGCGCGTACGTAAAGTGAATCAAGGTACCGATCGACGTCGATTCTTCGAAGTCCAAGGTTTCAGTCAGTGCAAGAGAGATCTGCCAATTTGCTTTGTTGCCGCGGCGGAGAACGATCGCAATCCGACCATGAATTGTCTTCAAAACCTTTCAATATCATCCTCTTTGCCGCTGCGAAGCTTCAAATGCCGGCAGAGAAAGCCTGAGTTCCAGCCCTGCAAACTGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTTCCGTGAAGGCCGTATCTGGATCTATATCAAGTGTTGAAATAAGTGGCGCTGAAGTGGATGATGCCGAGGAAAAAGAGGCAAAGGAGGAAAAGGAGGAAAAGGAGGAAAAGGAGGAAAAGTCTGAGATATACAGCCAGAACATGACAGAAGCTATGGGTGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTTGTCCGGATTTAATTGTAGGGTCATGCCTACAGACTCGAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTTAAAACAATTTTCTGCTTGCAGCAAGATCCAGATTTAGAATATTTTGGGGTTGACATTGGTGCTATAATAGAGTATACAAGGACGTTTGATGATATCGAACATTTGCGAGCTCAAATAAGGGATTTTGATGCATTCGACCTACGGCTAAGATTACCAGCTGTTGTAAGCAAATTACATAAAGCGATAAACCAAAACGGTGGAGTGACTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGCTGGCTTATATGTTCTGGGTTCAAGGCTACACGCTCAATGAGGCTTTAGAATTACTGCTGAGCAAACGACCATGCTTCCCAAAAATAGATGCTATTAAAAGTTCAACGGCTGATATTCTTTCGGGATTTAAAAAGAAGCCTATCACTTTATCGTGGGAAGATGACCAATGCTCAATTGTAGAGGTATCTGGACTTGATATTGGATGGGGTCAGAGGGTTCTATTAAAATTCGACAAGGAACGAGGTGTATGGATTCTCAACAAGGAACTGGCGGAAGGACTATATGAATACAAATATATCATTGACGGTCAATGGAGGTGCAACGAAACCGAGCCCGTTACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTCAAGTTGATGGTGATGATGATCCAAGTAGTGAGAGAGCTATTGTTCGAGGAAGGTTAACTGGAGATGACCCAGAACTCACGAATGAAGAAAGGAGCAAAATAAAGCAATTTCTTGAAGCTTGCCCGGATGAAAATTAA 1404 43.3 MHVRWQRININVNDHTQRHILCDSQERDREYAARVRKVNQGTDRRRFFEVQGFSQCKRDLPICFVAAAENDRNPTMNCLQNLSISSSLPLRSFKCRQRKPEFQPCKLVIRNFTDLHRRSSVKAVSGSISSVEISGAEVDDAEEKEAKEEKEEKEEKEEKSEIYSQNMTEAMGAVLTYRHELGMNYNFICPDLIVGSCLQTREDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIEYTRTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINQNGGVTYIHCTAGLGRAPAVALAYMFWVQGYTLNEALELLLSKRPCFPKIDAIKSSTADILSGFKKKPITLSWEDDQCSIVEVSGLDIGWGQRVLLKFDKERGVWILNKELAEGLYEYKYIIDGQWRCNETEPVTPPNKDGHVNNFIQVDGDDDPSSERAIVRGRLTGDDPELTNEERSKIKQFLEACPDEN 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9435129 9442507 - Carg20725-RA Car18g00844 166546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00844 467 Pfam Glycogen recognition site of AMP-activated protein kinase 343 427 IPR032640 -
Car18g00844 467 MobiDBLite consensus disorder prediction 134 161 - -
Car18g00844 467 MobiDBLite consensus disorder prediction 140 161 - -
Car18g00844 467 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 320 IPR000387 GO:0016311|GO:0016791
Car18g00844 467 Coils Coil 131 166 - -
Car18g00844 467 Pfam Dual specificity phosphatase, catalytic domain 236 322 IPR000340 GO:0008138|GO:0016311
Car18g00844 467 ProSiteProfiles Dual specificity protein phosphatase domain profile. 184 341 IPR020422 GO:0006470|GO:0008138
Car18g00844 467 MobiDBLite consensus disorder prediction 442 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01374 Car-Chr11:11232661 Car18g00844 Car-Chr18:9435129 1.18E-21 dispersed
Car04g01004 Car-Chr4:5767060 Car18g00844 Car-Chr18:9435129 5.42E-38 transposed
Car18g00844 Car-Chr18:9435129 Car04g01476 Car-Chr4:8569215 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00844 - - cpep:111802109 738.028