Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00857 ATGGAGCAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACGTATGGTGTGGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCTTTGAAGAAGATCCGCTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCTCTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTGCAAGATGTAGTGCATAGCGAGAAGCGCCTGTATCTTGTTTTCGAGTATCTGGATTTGGATTTGAAGAAGCACATGGACTCATCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGCCATTCTCATAGAGTTCTTCATCGAGATTTAAAACCCCAAAATCTACTCATCGATCGTCGCACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACGCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACCCCTGTGGATGTTTGGTCGGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCACTATTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATTCATGGCCTGGCGTTACATCTTTGCCTGATTTCAAGTCTGCTTTCCCCAAGTGGCCTTCCAAGGACCTGGCTTCTGTAGTTCCAAATCTTGAATCTGCTGGCATTGATCTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAGTGCTCTCGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA 885 44.52 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDSWPGVTSLPDFKSAFPKWPSKDLASVVPNLESAGIDLLSKMLCLDPTKRVTARSALEHEYFKDVGFVP 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9596081 9600937 + Carg18982-RA Car18g00857 166559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00857 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Car18g00857 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Car18g00857 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00857 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00857 294 PANTHER - 3 291 - -
Car18g00857 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Car18g00857 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Car18g00857 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Car18g00857 294 PANTHER CELL DIVISION PROTEIN KINASE 3 291 - -
Car18g00857 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Car18g00857 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01832 Car-Chr4:10607849 Car18g00857 Car-Chr18:9596081 2.64E-89 dispersed
Car05g00063 Car-Chr5:334121 Car18g00857 Car-Chr18:9596081 4.47E-91 dispersed
Car06g00539 Car-Chr6:3028724 Car18g00857 Car-Chr18:9596081 2.62E-71 dispersed
Car07g00581 Car-Chr7:2948883 Car18g00857 Car-Chr18:9596081 3.77E-38 dispersed
Car07g01149 Car-Chr7:6937306 Car18g00857 Car-Chr18:9596081 2.61E-122 dispersed
Car10g00299 Car-Chr10:1460610 Car18g00857 Car-Chr18:9596081 1.50E-64 dispersed
Car11g00272 Car-Chr11:1498123 Car18g00857 Car-Chr18:9596081 2.22E-87 dispersed
Car12g01227 Car-Chr12:11666806 Car18g00857 Car-Chr18:9596081 3.16E-17 dispersed
Car16g01140 Car-Chr16:9738891 Car18g00857 Car-Chr18:9596081 2.95E-69 dispersed
Car18g00659 Car-Chr18:7837306 Car18g00857 Car-Chr18:9596081 1.37E-92 dispersed
Car18g00857 Car-Chr18:9596081 Car04g02441 Car-Chr4:19443442 5.18E-77 dispersed
Car20g00870 Car-Chr20:7906557 Car18g00857 Car-Chr18:9596081 1.37E-07 dispersed
Car18g00857 Car-Chr18:9596081 Car04g01486 Car-Chr4:8651086 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89533 PF00069 Pkinase 4.00E-81 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00857 K02206 - csv:116405161 584.719