Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car18g00857 | ATGGAGCAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACGTATGGTGTGGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCTTTGAAGAAGATCCGCTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCTCTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTGCAAGATGTAGTGCATAGCGAGAAGCGCCTGTATCTTGTTTTCGAGTATCTGGATTTGGATTTGAAGAAGCACATGGACTCATCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGCCATTCTCATAGAGTTCTTCATCGAGATTTAAAACCCCAAAATCTACTCATCGATCGTCGCACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACGCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACCCCTGTGGATGTTTGGTCGGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCACTATTCCCTGGGGACTCTGAGATTGATGAATTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATTCATGGCCTGGCGTTACATCTTTGCCTGATTTCAAGTCTGCTTTCCCCAAGTGGCCTTCCAAGGACCTGGCTTCTGTAGTTCCAAATCTTGAATCTGCTGGCATTGATCTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAGTGCTCTCGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA | 885 | 44.52 | MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDSWPGVTSLPDFKSAFPKWPSKDLASVVPNLESAGIDLLSKMLCLDPTKRVTARSALEHEYFKDVGFVP | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 9596081 | 9600937 | + | Carg18982-RA | Car18g00857 | 166559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car18g00857 | 294 | CDD | STKc_CDK1_CdkB_like | 4 | 287 | - | - | |
Car18g00857 | 294 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 84 | - | - | |
Car18g00857 | 294 | Pfam | Protein kinase domain | 4 | 287 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car18g00857 | 294 | ProSiteProfiles | Protein kinase domain profile. | 4 | 287 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Car18g00857 | 294 | PANTHER | - | 3 | 291 | - | - | |
Car18g00857 | 294 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 123 | 135 | IPR008271 | GO:0004672|GO:0006468 | |
Car18g00857 | 294 | Gene3D | Transferase(Phosphotransferase) domain 1 | 86 | 292 | - | - | |
Car18g00857 | 294 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524 | |
Car18g00857 | 294 | PANTHER | CELL DIVISION PROTEIN KINASE | 3 | 291 | - | - | |
Car18g00857 | 294 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 290 | IPR011009 | - | |
Car18g00857 | 294 | SMART | serkin_6 | 4 | 287 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car04g01832 | Car-Chr4:10607849 | Car18g00857 | Car-Chr18:9596081 | 2.64E-89 | dispersed | |
Car05g00063 | Car-Chr5:334121 | Car18g00857 | Car-Chr18:9596081 | 4.47E-91 | dispersed | |
Car06g00539 | Car-Chr6:3028724 | Car18g00857 | Car-Chr18:9596081 | 2.62E-71 | dispersed | |
Car07g00581 | Car-Chr7:2948883 | Car18g00857 | Car-Chr18:9596081 | 3.77E-38 | dispersed | |
Car07g01149 | Car-Chr7:6937306 | Car18g00857 | Car-Chr18:9596081 | 2.61E-122 | dispersed | |
Car10g00299 | Car-Chr10:1460610 | Car18g00857 | Car-Chr18:9596081 | 1.50E-64 | dispersed | |
Car11g00272 | Car-Chr11:1498123 | Car18g00857 | Car-Chr18:9596081 | 2.22E-87 | dispersed | |
Car12g01227 | Car-Chr12:11666806 | Car18g00857 | Car-Chr18:9596081 | 3.16E-17 | dispersed | |
Car16g01140 | Car-Chr16:9738891 | Car18g00857 | Car-Chr18:9596081 | 2.95E-69 | dispersed | |
Car18g00659 | Car-Chr18:7837306 | Car18g00857 | Car-Chr18:9596081 | 1.37E-92 | dispersed | |
Car18g00857 | Car-Chr18:9596081 | Car04g02441 | Car-Chr4:19443442 | 5.18E-77 | dispersed | |
Car20g00870 | Car-Chr20:7906557 | Car18g00857 | Car-Chr18:9596081 | 1.37E-07 | dispersed | |
Car18g00857 | Car-Chr18:9596081 | Car04g01486 | Car-Chr4:8651086 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
89533 | PF00069 | Pkinase | 4.00E-81 | CL0016 | Car | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car18g00857 | K02206 | - | csv:116405161 | 584.719 |