Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00873 ATGGCCATAAGCCGATGTGTCGTCTTTAATCACTCACTTCTTCACTATCATCGTCGTCCTCCTTCACTTTTCTCATCTGCTCTGCGTTCGATCTCGTCATCCATGGAAGCTCCTCCCGAAGGTTACCGCAGAAACGTTGGCATTTGCCTCATCAATTCTTCTAAGAAGATTTTTGCTGCCTCAAGGTTGGATATACCAGATGCTTGGCAAATGCCACAGGGCGGCGTGGATGAGGGTGAAGATCCAAGAAGTGCAGCCATCAGAGAACTTAGAGAAGAAACAGGAGTCAGATCCGCAGAGATTATTGCTGAAGTACCTTATTGGCTGACTTATGACTTCCCACCACATGTCCGGGAAAAACTTCGACATCAGTGGGGTTCTGACTGGAAGGGTCAAGCGCAGAAGTGGTTTCTGCTGAAGTTGACTGGAAGTGACGAAGAGATCAATCTTTTAGGTGATGGGACTGAGAAACCCGAGTTTGGCGAATGGTCATGGATGTCACCTGAACAAGTAGTCGAACGTGCTGTAGATTTCAAGAAACCCGTTTACAAAGACGTTCTAACGGTATTCAAACCCCATCTCGAGTAA 588 46.94 MAISRCVVFNHSLLHYHRRPPSLFSSALRSISSSMEAPPEGYRRNVGICLINSSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVRSAEIIAEVPYWLTYDFPPHVREKLRHQWGSDWKGQAQKWFLLKLTGSDEEINLLGDGTEKPEFGEWSWMSPEQVVERAVDFKKPVYKDVLTVFKPHLE 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9699564 9703847 + Carg18999-RA Car18g00873 166575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00873 195 Pfam NUDIX domain 42 185 IPR000086 -
Car18g00873 195 Hamap RNA pyrophosphohydrolase [rppH]. 36 195 IPR022927 -
Car18g00873 195 ProSiteProfiles Nudix hydrolase domain profile. 41 188 IPR000086 -
Car18g00873 195 ProSitePatterns Nudix box signature. 74 95 IPR020084 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00873 - - - csv:101206740 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00323 Car-Chr14:1542708 Car18g00873 Car-Chr18:9699564 7.57E-47 dispersed
Car18g00873 Car-Chr18:9699564 Car19g00660 Car-Chr19:7885146 7.09E-07 dispersed
Car04g00931 Car-Chr4:5340044 Car18g00873 Car-Chr18:9699564 4.82E-69 transposed
Car14g00324 Car-Chr14:1544384 Car18g00873 Car-Chr18:9699564 4.96E-19 transposed
Car18g00873 Car-Chr18:9699564 Car06g00459 Car-Chr6:2527924 5.54E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00873 Car_Chr18 FPKM 8.684437 10.20753 24.284071 21.144972 13.590291 11.802662 11.057937 83.788895 90.142731 78.097679