Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00888 ATGAACTTGGCTGTTTGTGGGGATAGATTTGTAGCAATAGATGTGACATTTAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTAGCACTAAGGAGCAGTGCAGATCTCTCAACATTCTACCGCTGCAGCTTCGAGGGCTATCAAGACACTCTCTACGTCCATTCCCTAAGACAATTCTACCGAGAATGCGACATTTACGGCACAGTAGATTTTATATTTGGCAATGCTGCTGCAGTTTTCCAAAAATGCAATCTATACGCCAGAAAGCCACTCCCAAACCAAAAGATCGCCATCACAGCACAGGGCCGAACCGATCCGAACCAAAACACCGGTATCTCGATCCATGACTGCACGATCAAGGCAGCCCCCGACTGGGAGACGGATTACTCAAACTCGACGACGACAAACTATCTTGGACGGCCATGGAAGCAGTACTCAAGAACAGTGTATATGCAGTGTTACATTGGGGATTTGATCAGCCCTGTGGGGTGGTTGGAGTGGAATGGAACAGCAGGGTTGGACACTTTGTATTATGGGGAGTTTGAGAATTATGGGCCAGGAGCTAACACAAGCTTGAGGGTGGATTGGCCTGGCTATAGCTTGATGAATATTACTCAAGCTATGAACTTTACTGTCTATAATCTTACTATGGGAGATACATGGCTGCCTTACACTGATATTCCCTTCTCTGGTGGTTTGGTCTAA 708 46.89 MNLAVCGDRFVAIDVTFRNTAGPEKHQAVALRSSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQKCNLYARKPLPNQKIAITAQGRTDPNQNTGISIHDCTIKAAPDWETDYSNSTTTNYLGRPWKQYSRTVYMQCYIGDLISPVGWLEWNGTAGLDTLYYGEFENYGPGANTSLRVDWPGYSLMNITQAMNFTVYNLTMGDTWLPYTDIPFSGGLV 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9777797 9778748 - Carg19014-RA Car18g00888 166590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00888 235 Pfam Pectinesterase 3 219 IPR000070 GO:0030599|GO:0042545
Car18g00888 235 ProSitePatterns Pectinesterase signature 2. 66 75 IPR033131 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01516 Car18g00888 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00888 Car-Chr18:9777797 Car17g01015 Car-Chr17:8052657 1.76E-106 dispersed
Car15g00913 Car-Chr15:5737801 Car18g00888 Car-Chr18:9777797 2.35E-99 wgd
Car18g00888 Car-Chr18:9777797 Car04g01516 Car-Chr4:8807358 9.42E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00888 K01051 - csv:101206112 452.981