Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00890 ATGAGTATCTCTCCCTCTGCTTCTTCTTGCTCTTCGTCTTCCTCTTCCTGCGTCGGTTCAGATTCCGCCATTAATATTAAGAAGAAGAAGAAGAATCTCTCCGCTCCTCTCCGGCCGCACTCGGAGAAAGCCAGAATCAAGCGGCGACGGAGGAATCAGGACGAATCGAAACGCGAGATTCATAATAACAACAGCACTGGAATCAACAACAACAACAACAACAACGCATCTTCCGCTCGCCGGAGTTCCATTTACAGAGGAGTCACGAGGCATCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGGAGCTTATGATAACGAGGAAGCTGCAGCACGAACTTATGACCTTGCTGCCCTCAAATACTGGGGACCGGAAACCACTCTCAATTTCCCGGCAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTAACGAAGGAAGAATATTTGGCGTCGTTGCGGCGGCGGAGCAGCGGATTTTCTAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGACACCACTACAATGGCCGGTGGGAGGCTCGGATTGGCCGCGTTTTTGGAAGCAAATATCTTTACTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCAATTGAATACAGAGGACCCAATGCGGTTACCAACTTTGACATTAGCAATTACATTGGGAGGAGATTAGAGACCAAATCATCAGTTTTTGAAGCAGCTGAGCAACCAAAAGAAGAGCCCAATGACTCCCCTGTTTCTTCTGAGGGAGAAGTTGTGTATCAGCCCGAAGAACAGCAAACGACATCGTGGCCGAGCCTTCAATTCTCGACGATGCTTCCATCGATCGAGAATAGCCCGTCAATGGGTGTCATGGGAGACGATCAGGATCTCAATTGGTCTTTCTTAGACACTGGATTCGTCGAGGTCCCTGACCTCCCGCTTGAGAAAACGAGTGAATTAGCTGATCTCTACTTCGATGAGATTGGGTTCGAGGACGACATTGGTTTGATGTTCGAAACGAGCATTGAGGGTGGTGATAGTAAAGAAGATCTTAATGTTGGGAAGATGGAGACGAACAATGCTCCTTCGCCATCGTCTTCGTCGATAATAACCAACTCGGTTTCGTGCGAAAAAGATGAGATTGTTGGGTTTTGTTGA 1218 48.19 MSISPSASSCSSSSSSCVGSDSAINIKKKKKNLSAPLRPHSEKARIKRRRRNQDESKREIHNNNSTGINNNNNNNASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQGAYDNEEAAARTYDLAALKYWGPETTLNFPAESYTNEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHYNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGPNAVTNFDISNYIGRRLETKSSVFEAAEQPKEEPNDSPVSSEGEVVYQPEEQQTTSWPSLQFSTMLPSIENSPSMGVMGDDQDLNWSFLDTGFVEVPDLPLEKTSELADLYFDEIGFEDDIGLMFETSIEGGDSKEDLNVGKMETNNAPSPSSSSIITNSVSCEKDEIVGFC 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9784440 9788170 - Carg19016-RA Car18g00890 166592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00890 405 MobiDBLite consensus disorder prediction 258 292 - -
Car18g00890 405 ProSiteProfiles AP2/ERF domain profile. 84 147 IPR001471 GO:0003700|GO:0006355
Car18g00890 405 MobiDBLite consensus disorder prediction 1 22 - -
Car18g00890 405 Pfam AP2 domain 182 233 IPR001471 GO:0003700|GO:0006355
Car18g00890 405 Pfam AP2 domain 84 139 IPR001471 GO:0003700|GO:0006355
Car18g00890 405 MobiDBLite consensus disorder prediction 1 81 - -
Car18g00890 405 ProSiteProfiles AP2/ERF domain profile. 183 241 IPR001471 GO:0003700|GO:0006355
Car18g00890 405 MobiDBLite consensus disorder prediction 62 81 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01517 Car18g00890 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00890 Car-Chr18:9784440 Car11g00359 Car-Chr11:1969480 2.83E-10 dispersed
Car18g00890 Car-Chr18:9784440 Car04g01517 Car-Chr4:8812436 6.89E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5194 PF00847 AP2 2.60E-09 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00890 - - csv:101206349 502.671