Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00897 ATGGGATACTTCAGATTGCTTTATGAAACGGGCATCGAGTTTAGTGAAGAAGACCTACTTGCTGCAATTGTGCCGTTAATGAAGCTTCTCTGCCTCGCAGTAATTGGATTGATTCTTGCTCATCCAAAGACAAAAATCATCCCAAAAGAAACATTTAGCCTGCTTTGCAAACTTGTTTTTGCCTTGTTCTTGCCCTGCCTGATTTTTACTGAACTAGGCCAAAGTATTACGCTCGAAAGTGTTACTCAGTGGTGGTTTATCCCAGTAAATGTGCTACTCAGCACGGCTATCGGCTGTGCTCTTGGGTATTTAGTGGTTGCTCTATGTCATCCACCCCCTGAGTTTAATAGATTGACTGTTGTTATGACAGCATTTGGTAATACAGGAAACCTCGCTCTTGCAGTTGTGGGGTCAGTTTGCCACACTGCAGATAACCCTTTTGGACCAAATTGTCACTCTAGTGGGGTGACTTACGTCTCACTTGCTCAATGGGTTTCGGTCATTCTGGCCTATACCCTCGTTTATCACATGATGAAACCTCCACCTGAGTGCAATGTAATTTTAGATGAAGGCATTGAAATTGTAGAAGAACGAGCTGATAATGATTTGAGCAGGCCTCTCCTTGCAGAAGCTGAATGGCCAAGCATTGAGGACAAAGAAACAGAACATTCCATGACATCCTTCATCCCTAGAATTCTCAATAGCATTTCAACTACACCGCAGACCACTTCTACTGATATCGAAATCTCAGGAGGGGGCGACTGTACTGACAATCCCAAGCCTAATGATATCGAACTTGCAGGGGACAACAGGACTAACAGTCCCAAATCCACCGAGTTCTTGGCTGAGCCGAGAGTAGTGAGGAGGCTGAGCCATCTTGCTGAGCAAACTCCAATACAGCACATCCTTCAACCCCCAACAATTGCTTTTCTAGCAGCCATCATTATTGGGCTAATTCCACCACTGAAATCGCTCTTCTTTGACTATAATGCTCCATTATCAGTTGTCAAAGACAGTCTAGAAATTCTAGCCCGTGCTACCGTGCCTTCTGTTATGCTCATTCTTGGGGGCTTGCTTGCAGAATGCTCAAACACATCTACACTAGGCCATCGAACCACAATCGGTATAATCACAGCAAGGCTCTTGGTCCTCCCCGTGTTGGGAATTGGGATGGTCTTGTTGGCTGATAAACTGAATTTTCTTGTTTCTGGGGATCAAATGTACAGATTTGTGCTTCTGTTACAATACACTACCCCAAGTGCTATTTTATTGGGAGCACTAGCCAGCTTGGGAGGATATGCAATTAGAGAAGTTTCTGCACTTCTCTTCTGGCAACATATATTTGCTCTCTTCTCCCTTTCTGTCTATGATTCATGCCTTGCTCCTGATGATGTCTGTTGA 1401 44.33 MGYFRLLYETGIEFSEEDLLAAIVPLMKLLCLAVIGLILAHPKTKIIPKETFSLLCKLVFALFLPCLIFTELGQSITLESVTQWWFIPVNVLLSTAIGCALGYLVVALCHPPPEFNRLTVVMTAFGNTGNLALAVVGSVCHTADNPFGPNCHSSGVTYVSLAQWVSVILAYTLVYHMMKPPPECNVILDEGIEIVEERADNDLSRPLLAEAEWPSIEDKETEHSMTSFIPRILNSISTTPQTTSTDIEISGGGDCTDNPKPNDIELAGDNRTNSPKSTEFLAEPRVVRRLSHLAEQTPIQHILQPPTIAFLAAIIIGLIPPLKSLFFDYNAPLSVVKDSLEILARATVPSVMLILGGLLAECSNTSTLGHRTTIGIITARLLVLPVLGIGMVLLADKLNFLVSGDQMYRFVLLLQYTTPSAILLGALASLGGYAIREVSALLFWQHIFALFSLSVYDSCLAPDDVC 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9837540 9838985 + Carg19023-RA Car18g00897 166599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00897 466 MobiDBLite consensus disorder prediction 240 277 - -
Car18g00897 466 Pfam Membrane transport protein 23 456 IPR004776 GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00897 K24139 PILS, ECM3; auxin efflux carrier family protein - egr:104453733 604.364
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g00895 Car18g00897 CCT
Car15g00895 Car18g00897 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00895 Car-Chr15:5446529 Car18g00897 Car-Chr18:9837540 0 dispersed
Car16g01210 Car-Chr16:10185306 Car18g00897 Car-Chr18:9837540 7.87E-13 dispersed
Car18g00897 Car-Chr18:9837540 Car03g00231 Car-Chr3:3586402 1.41E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g401 . . . . . . Bma14g01581 . . Cmo18g00982 . Cma18g00978 . Car18g00897 . Cpe09g00339 . . . . . . . . . . . . . . . Cone13ag0778 Cone19ag0781 . . . . . . . . . . . . . . . . Cmo15g00991 . Cma15g00951 . Car15g00895 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004273 1 1 0 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 2 3 3 1 2 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00897 Car_Chr18 FPKM 45.529659 49.047825 64.290344 55.731564 75.323944 60.812557 73.697929 31.238165 29.556541 29.338041