Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00918 ATGGTTATGGTGGGTCTTTTCATCTCTGGAGAGATGTTGGTATCAGTTCAGGTAACTGGAAACCTCAAAAGGTTCCCTCAGGACACTTTGCAGCTGTCAATGGATATTTCATGGGCCAGATCTGGTGATTATTTTGTTTCAGTCAGTCATGACCAGACAACTCGGATTTTTTCTCCTTGGAAAAATGTAAATTCTCTTGAAGAAGGTTCTTGGCATGAAATAGCTCGACCTCAAGTCCATGGGCATGATATTAATTGTGTCACCTTAATTCAAGGAAAGGGGAACCATCGCTTTGTCAGTGGAGCAGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTCTAAAGACGTTGAGTCATGCCACACAGCAGAATTTTGTGGGCACGGAAGATCATCTTGTGGATGTTCAGATTTTGGGCGCTAATATGTCGGCTCTTGGGCTCTCACAGAAACCTATTTATGTTCACTCTGCTAACAAGACTCCGGACAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCCGATGCAGTTCCTGTTGTTCTGACTGAACCTCCCATTGAAGATCAACTAGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGAAATGAGCTATTTTCTCTTTGTTGTGATCACAAGGGGAAGCTTGTTGCTTCATCCTGTAAGGCACAAACTGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCGTGGAAGGCAGTTGGTCGTCTGCAATCGCACAGCTTAACAATAACACAAATGGAGTTTTCCCGTGATGACAGCATGCTGTTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTTAAAATCCAGAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAATCCATTTGGTCATGAGTTCGCAACAGGCTCTAGGGATAAGACTGTGAAGTTATGGACTGTGACACCTGATTATTCTTCAGTGAAGCAACTAGCAACTTTGTCACAGTTCAAATCTAGCGTCACCGCCTTATCGTGGGTCGGTCTTGATCCCGAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAATGGCCTCCTTGAGCTGTGGAGTTTATCTATCAAAAGAACCGAAGGAGTTAGCTCAAATGTGGTTGCTTCAGTCGTAAAACGTCTCGATCCATTTGTGTGCCACGTTTCCTCGGTCAACCGTTTGTCATGGAGGGAACCAGAGGAGGAGATCGAAGAGTGCAGGAAGCTGCAGCTTGCTTCCTGTGGGGCTGACCACTGTGTTAGAGTGTTTGAGGTAAAAGTTTCTGTATGA 1365 44.84 MVMVGLFISGEMLVSVQVTGNLKRFPQDTLQLSMDISWARSGDYFVSVSHDQTTRIFSPWKNVNSLEEGSWHEIARPQVHGHDINCVTLIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATQQNFVGTEDHLVDVQILGANMSALGLSQKPIYVHSANKTPDRSGNEGLDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSRDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPFGHEFATGSRDKTVKLWTVTPDYSSVKQLATLSQFKSSVTALSWVGLDPESNGLLAVGMENGLLELWSLSIKRTEGVSSNVVASVVKRLDPFVCHVSSVNRLSWREPEEEIEECRKLQLASCGADHCVRVFEVKVSV 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9960513 9966646 - Carg19044-RA Car18g00918 166620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00918 454 Pfam WD domain, G-beta repeat 304 334 IPR001680 GO:0005515
Car18g00918 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 336 - -
Car18g00918 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 336 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00918 K11374 ELP2; elongator complex protein 2 - csv:101209018 769.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00918 Car-Chr18:9960513 Car03g00788 Car-Chr3:6546732 5.21E-06 dispersed
Car18g00918 Car-Chr18:9960513 Car14g00282 Car-Chr14:1349045 1.38E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00918 Car_Chr18 FPKM 19.694725 21.706276 23.544598 21.655491 11.648059 14.568529 13.583659 22.2136 23.476179 22.12603