Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00920 ATGGAAAACCCTCCTTCCATCTCCTTCATCTTTCTCCTCTGCAACTTCTGTCTTTCAATGGCGGCTTTGAACGACGAGGGCACCGCCCTTTTCTCCTTCAAACAGTTCATCACAGAAGACCCAGAAGCCTCCCTCAGCAACTGGAATTCTTCAGATCAAAACCCTTGTTCTTGGAATGGCGTTACATGCAATGATCTAAGAGTCGTTTCCCTTAGTATTCCCAAGAAGAATCTCAAAGGGATTCTCCCTTCTTCGTTGGGGATTCTTTCTCACCTTCGCCATGTGAATCTAAGGAACAATAAACTCCATGGAACTCTGCCATTGGAGCTTTTCCAAGCTAATGGAATACAGAGCTTGGTGATTTTTGGGAATTCCTTTTCTGGGTTTGTCCCAAATGATGTTGGTAAGCTCAAAAACCTTCAAATCTTGGATTTATCTCATAATTTCTTTAATGGGTCGTTGCCTGTTTCGTTGATTCAATGCACAAGACTTAGAGTTCTTGATATTAGTCACAATAATCTTACCAATGCTCTGCCTGTTGGATTTGGTTCTAGTTTGAATTTCTTGGAAAAATTGGATGTTTCTCACAATATGTTCAATGGTTCAATCCCTATGGATATTGGTAATCTCTCTAGCTTGCAAGGAACTGTTGATTTCTCATATAATTTGTTCTCTGGTTCAATCCCTGCTAGCTTAGGAAACCTTCCTGAAAAGGTTTATATTGATCTTAGTTATAATGATTTGAGTGGTTCAATACCCCAAAATGGTGCTCTTATGAACAGAGGACCTACTGCTTTCATTGGTAATCCTGGTCTTTGTGGACCTCCATTGAAGAATCCGTGTTCTTCGGAAGCTCCAGGCGCGAGTTCGCCATCGTCTTTCCCGTTTTTCCCGGATAACTCTCCACCTGGGAGGTCTGAGGGTAATGGAGGGTTGAGTAGGAGCACGTTGGTTGCGATAATCGTCGGCGACATTATCGGTATCTGTCTGATTGGGTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGGACTCGTAGAAATGGGAAGAAGGTAGAGCAATCTAAAGATGGTCTTCATAAGGGAGAGAAAGGAAGAAAGGATTGTCTCTGCTTTCGAAAGGGTGAATCCGAGAATGTTTCGGAGCATGTACAGCAGTTTGATCTTGTAGCTCTCGATTCAAATGTGACGTTTGATCTCGATGAACTTCTTAAGGCGTCGGCGTTCGTTTTGGGGAAAAGTAGTATCGGGATAGTGTATAAAGTCGTGCTCGAAAATGGTCTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCACAAAGGTTTAAAGAGTTTCAAACTGAAGTTGAAGCAATTGGGAAGCTAAGGCATCCAAATGTTGTTGGCCTTAGAGCTTATTATTGGTCTGTTGATGAAAAACTGCTTATTTATGATTACATATCAAATGGGAGCCTTGCATTTGCCATTCATGGGAAGCCCGGGACATCGTCGTTTACACCGTTACCGTGGTCGGTTCGGTTAAGAATCATGGAAGGTATTGCAAAAGGGTTGGTTTACTTGCATGAGTTTAGCCCCAAAAAGTATGTCCATGGCAATTTGAAGACGAACAACGTACTTCTCGGACACAACATGGTACCTCATATTTCGAATTTCGGGCTTGCTCGACTTGTTAACATCGCTGGAGGATCTCCGACTCTGCAATCGGGTCACTTGACAGACGAAAAACCCCACGAGAAACAGCTTAAGTCTGCAACTTCTGAAGCTAGTACATTCAGTTCTAATATGAATACTTACTACCAAGCCCCAGAAGCTTTAAAGGTCGTGAAGCCATCGCAGAAATGGGACATTTACTCGTTCGGTGTGATATTACTCGAAATGATCACCGGAAGGTTACCGATAGTTCAGGTTGGAGCGTCGGAGATGGATCTTGTTCAATGGATTCAACTCTGCATTGAGGAAAAGAAGCCGCTTTCGGATGTTATAGATCCGTCTTTGACACCGGACGACGATACAAACGAGGAGATTATCACGGTTTTGAAGATATCTTTAGCTTGTGTTCAAAATAGTCCCGAAAGAAGACCGACGATGAGACATGTTTCTGATGCGTTGAGTAGGATGATTGTGAATCCAAAGTGA 2136 42.84 MENPPSISFIFLLCNFCLSMAALNDEGTALFSFKQFITEDPEASLSNWNSSDQNPCSWNGVTCNDLRVVSLSIPKKNLKGILPSSLGILSHLRHVNLRNNKLHGTLPLELFQANGIQSLVIFGNSFSGFVPNDVGKLKNLQILDLSHNFFNGSLPVSLIQCTRLRVLDISHNNLTNALPVGFGSSLNFLEKLDVSHNMFNGSIPMDIGNLSSLQGTVDFSYNLFSGSIPASLGNLPEKVYIDLSYNDLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSEAPGASSPSSFPFFPDNSPPGRSEGNGGLSRSTLVAIIVGDIIGICLIGLLFSYCYSRFWTRRNGKKVEQSKDGLHKGEKGRKDCLCFRKGESENVSEHVQQFDLVALDSNVTFDLDELLKASAFVLGKSSIGIVYKVVLENGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVVGLRAYYWSVDEKLLIYDYISNGSLAFAIHGKPGTSSFTPLPWSVRLRIMEGIAKGLVYLHEFSPKKYVHGNLKTNNVLLGHNMVPHISNFGLARLVNIAGGSPTLQSGHLTDEKPHEKQLKSATSEASTFSSNMNTYYQAPEALKVVKPSQKWDIYSFGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLTPDDDTNEEIITVLKISLACVQNSPERRPTMRHVSDALSRMIVNPK 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9971576 9973937 - Carg19046-RA Car18g00920 166622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00920 711 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Car18g00920 711 MobiDBLite consensus disorder prediction 283 309 - -
Car18g00920 711 Pfam Leucine Rich Repeat 139 157 IPR001611 GO:0005515
Car18g00920 711 Pfam Protein kinase domain 410 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00920 711 ProSiteProfiles Protein kinase domain profile. 404 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02015 Car18g00920 CCT
Car04g01544 Car18g00920 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01838 Car-Chr4:10650596 Car18g00920 Car-Chr18:9971576 0 dispersed
Car18g00653 Car-Chr18:7798146 Car18g00920 Car-Chr18:9971576 0 dispersed
Car18g00920 Car-Chr18:9971576 Car20g00831 Car-Chr20:5532013 6.22E-135 dispersed
Car15g00063 Car-Chr15:420303 Car18g00920 Car-Chr18:9971576 0 transposed
Car18g00920 Car-Chr18:9971576 Car04g01544 Car-Chr4:8977076 0 wgd
Car18g00920 Car-Chr18:9971576 Car04g02015 Car-Chr4:15963145 2.90E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89535 PF00069 Pkinase 1.10E-28 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00920 - - cpep:111801478 1340.48