Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00926 ATGGTGGCGGCTACATTACTGTCGCATTTCGCTCTTTGTCTTTGTTTACTCCCTTTTGCACATCTTTATGCTTCTTCGAACTCGGATTTTGACGCTTTAATGGCGTTCAAAGAGGCGTCTGATGAAGGGAATAAGCTCACCACATGGAACTCTACTTCGAACCCGTGCGCTTGGAATGGAGTGTCTTGCCTCAGAAACAGAGTCTCGAGGTTAGTTCTTGAGAATCTTGATCTAACAGGCTCTCTTGCACCTCTTACTGGTTTGACTCAGTTACGAGTGTTGAGCCTTAAGCGGAATCGTCTCTCTGGTTCCATTCCTGATTTCTCCAACTTCACCGCTCTTAAACTCGTGTTTCTCTCGTATAATCAATTTTCCGGCGATTTTCCGGCGTCTTTGATGTCTCTTGTCCGTCTCTACCGTCTTGATCTCTCTCACAATAACTTCACCGGACAGATTCCGGCCTCTGTTAACCGTTTGTCTCATCTTCTTACTCTCCGCCTCGAAGAGAACCGGTTTTCTGGTCCTGTTTTGGAACTGAACCTGCCGAATCTTCAGGATTTCAACGTTTCAGCGAATCGTTTCTCAGGTCAAATCCCTAAATCGTTGTCGACGTTTCCGGCGTCTTGTTTCGGCCAGAACTTGGGTTTGTGTGGATCTCCTCTACAGAGCTGCAATGGCATTGTTACTAACCCGACGGAACCCGGATCCGAAGGGGCCATTGCGTCCCCCATAACACCGCCGCGGAATCTAACAGTTTCATCTTCTCCGACATCGCTTCCCGGAGTTACGCCGGAAAGCACCCACCACAAAGGCACCGGGAAGATAGGTTCTCTGGCGCTAATCGCTATAATTCTCGGCGATGTATTGGTGTTGGCAGTAGTCTCGCTTCTTCTCTACTGCTATTTCTGGAGAAACTCCTCCGACAAATCCCGAGATAGGAAGGGGCCGAAGCTTCTTGAGAGCGAGAAGATCGTTTACTCGTCGAGTCCATATCCAGCTCAGGCCGGATCAGAGAGGGGTCGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGAAAAGGTGGGTTCGGAACTTCATACAAAGCGATTCTCGACGACGGCAATGTCGTGGCGGTGAAACGGCTGAAAGACGCGCAGGTCGGAGGTAAACGAGAGTTTGAGCAGCACATGGAGGTGCTCGGAAGGTTGAAACATGAACATATTGTAAGCTTGAGAGCTTACTATTTTGCGAGAGAGGAGAAGCTTTTGGTTTATGATTACATGCCCAATGGCAATCTGTTCTGGCTTCTTCATGGAAACAGAGGCCCTGGACGGACGCCGTTGGATTGGACGACGAGGTTAAAGATCGCCGCCGGAGCAGCCAGAGGTCTGACCTTCATTCACAACTCCAGTAAGTTTCTCAGGCTTGTTCATGGCAATGTGAAATCCACTAACATTCTTCTGGATCAATCGGGAAATGCTCGAGTTTCCGATTTTGGACTGTCCCTTTTCACTCCCCCTTCCACTCCACGATCCAACGGCTACCGAGCGCCGGAGTGCAGCGAAGGTCGGAAACTGACGCAGAAATCCGACGTCTATTCATTTGGGGTTCTTCTTCTCGAGCTGTTAACTGGAAAGTGTCCTTCCGTGGTGGAGAATGGTGGGCCAGGAGGCGGTGGATACGGCGGCGTGCTGGATTTGCCACGGTGGGTTCAGTCAGTGGTGCGGGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATTGCATTGACTTGTACTTCGGCTTCGCCCGATCAACGGCCGAAAATGATCCATGTGGTGAAGATGATCGATGAGCTTCGTGGGGTGGAGGTGTCGCCGTTCCATGACGGCTCCGACTCGGTGACGGAGTCGCCGTCGGTGTCGGAGGGGACTTGCGGCGGCGGCGGAGGAGGAGCCAGTAGTCAGTGA 2016 51.39 MVAATLLSHFALCLCLLPFAHLYASSNSDFDALMAFKEASDEGNKLTTWNSTSNPCAWNGVSCLRNRVSRLVLENLDLTGSLAPLTGLTQLRVLSLKRNRLSGSIPDFSNFTALKLVFLSYNQFSGDFPASLMSLVRLYRLDLSHNNFTGQIPASVNRLSHLLTLRLEENRFSGPVLELNLPNLQDFNVSANRFSGQIPKSLSTFPASCFGQNLGLCGSPLQSCNGIVTNPTEPGSEGAIASPITPPRNLTVSSSPTSLPGVTPESTHHKGTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWRNSSDKSRDRKGPKLLESEKIVYSSSPYPAQAGSERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLKHEHIVSLRAYYFAREEKLLVYDYMPNGNLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLTFIHNSSKFLRLVHGNVKSTNILLDQSGNARVSDFGLSLFTPPSTPRSNGYRAPECSEGRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALTCTSASPDQRPKMIHVVKMIDELRGVEVSPFHDGSDSVTESPSVSEGTCGGGGGGASSQ 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10004979 10007310 + Carg19052-RA Car18g00926 166628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00926 671 MobiDBLite consensus disorder prediction 646 671 - -
Car18g00926 671 MobiDBLite consensus disorder prediction 235 268 - -
Car18g00926 671 Pfam Protein tyrosine and serine/threonine kinase 362 631 IPR001245 GO:0004672|GO:0006468
Car18g00926 671 MobiDBLite consensus disorder prediction 246 265 - -
Car18g00926 671 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Car18g00926 671 MobiDBLite consensus disorder prediction 642 671 - -
Car18g00926 671 ProSiteProfiles Protein kinase domain profile. 358 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01549 Car18g00926 CST
Car04g00922 Car18g00926 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00374 Car-Chr6:2060553 Car18g00926 Car-Chr18:10004979 3.50E-178 dispersed
Car14g00239 Car-Chr14:1117424 Car18g00926 Car-Chr18:10004979 1.54E-176 dispersed
Car18g00926 Car-Chr18:10004979 Car11g00462 Car-Chr11:2548674 8.31E-174 dispersed
Car18g00926 Car-Chr18:10004979 Car04g01549 Car-Chr4:8998814 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89537 PF07714 PK_Tyr_Ser-Thr 1.60E-34 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00926 - - cpep:111802740 1259.2