Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00934 ATGAAGCCCTGCAGAGCTTTCATGGCGGGTCTTCTAGTGTTCTTGGTGTTCATCTTTCCTGTTAGCTTTGGTTGGGGCCTCGATGGCCATTTTACCATCTGCAAGATCGCTCAGTCGCGGTTGAGCAGAGCAGCAGCTGATGCAGTGCAGCGACTGTTGCCTGAGTATGCAAATGGTGAATTGGCGAACGTTTGTATTTGGGCTGATCGAATCAAGTTTCGATATCGATGGTCATCTGCTCTTCATTATCCTCTTCATGTTGGGTTTGCTGAAGACAAGGGAGGAAACACGATTGAAGTTCACTGGTACACCAGAAAGCAAAATCTACACCATATATGGGATAGCAACATAATCGAGACAGCAGAAGAAAAGTTCTACGACTCAAGTTTGGATGGCCTGATCGATGCAATCCAAACAAATATTACGAAGGAATGGACAGATGAAGTTGAAGAATGGGAAAAGTGTAACTCTAAGAAGATAGCATGCACGGATATCTATGCATCAGAGAGTATCCGAGCAGCATGTGACTGGGCATACAAAGGCGTAACCGAAGGGGCTACGCTAGCAGCGCAATATTTTTCGACCCGAGTGCCAGTAGTGTACCTGCGGTTGGCACAAGGCGGAGTCAGATTAGCAGCTGTTTTGAATAGCATCTTTGGTTGA 663 46.3 MKPCRAFMAGLLVFLVFIFPVSFGWGLDGHFTICKIAQSRLSRAAADAVQRLLPEYANGELANVCIWADRIKFRYRWSSALHYPLHVGFAEDKGGNTIEVHWYTRKQNLHHIWDSNIIETAEEKFYDSSLDGLIDAIQTNITKEWTDEVEEWEKCNSKKIACTDIYASESIRAACDWAYKGVTEGATLAAQYFSTRVPVVYLRLAQGGVRLAAVLNSIFG 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10042848 10044994 - Carg19060-RA Car18g00934 166636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00934 220 Pfam S1/P1 Nuclease 81 219 IPR003154 GO:0003676|GO:0004519|GO:0006308
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00934 K05986 NUCS; nuclease S1 [EC:3.1.30.1] - csv:101217955 241.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00430 Car-Chr3:4856277 Car18g00934 Car-Chr18:10042848 2.79E-35 dispersed
Car03g00431 Car-Chr3:4858559 Car18g00934 Car-Chr18:10042848 1.55E-16 dispersed
Car18g00934 Car-Chr18:10042848 Car13g00549 Car-Chr13:7423555 1.69E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g320 . . . . . . . . . Cmo18g01021 . Cma18g01011 . Car18g00934 Sed14g1420 . . Bhi07g01314 Tan04g0840 Cmetu10g0883 Lac13g0508 Hepe01g1181 . . Cla05g02289 Cam05g2462 Cec05g2482 Cco05g2525 Clacu05g2457 Cmu05g2318 Cre05g2436 Cone13ag0823 . . . Lsi04g00243 Csa05g02623 Chy10g01158 Cme10g00248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012177 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00934 Car_Chr18 FPKM 1.736059 1.232541 0.777145 0.965397 0.05099 0.860652 0.0 2.666928 1.726501 2.656853