Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00948 ATGGATTCTACATTCTCCTATATAAAATCGCGGAATTCTGATCCAATCCTTCTTGCTCTCTTTGCTTGCGCTTTCGGTTACCGTCGTTCGGAGGCTTTGCTCGCTCTAGGGTACTACCATAATTCTCTCGAATCCGGCGTACGACGTGCTGCTGTGGTCTTGCATCTCTGCGAAGGCCGCGATCGAGTTCTGAAGATGAAGATTTTCGTCAAGACTCTCAAGGGCTCACACTTCGAAATCGAAGTTCAGCCTCAAGATATGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCTGACGTTTACCCTGCTGCACAGCAGATGCTTATCCATCAGGGAAAAGTTCTTAAAGACGGCACAACACTGGATGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATCATGTTGACAAAGAATAAAAGTTCATCGGGTGGGACGTCTTCTACCACACAAGCTGCACCAGTGTCAAAGGCACCACAGAACACTGCCCCTGCACCTGCTGCAACTCCAGTCTCAACATCTGAAGTTCCTCTACCAACTTCAGCACCTCCGGCTACTATTACCACCTCTTCTCTTCCAGCTCCAGCTCCAGCTCCAGCGCCAGCTCAGGCGCCGGCAACCACTGTCTTGCCAGAATCTGATGTCTACAGCCAAGCAGCTTCTAACCTGGTCGCGGGCAGTAACTTGGAGGAGACTATCCAACAGATTCTTCTCATGGGCGGAGGGATTTGGGATAGGGACACTGTTGTTCAAGCTCTTCGTGCTGCTTACAATAATCCAGAAAGGGCTGTTGATTACCTTTATTCTGGCATACCTGAACAAGTTGAAGTTCCACCTGCTGCTCATGTTCCGTCTACTGTTCCAGTGACCAACCCTTCCGCTCAACCTGCACAGCCTGCCCAACCTGCGTCTGCGACAACCACTGGTCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTACCTAATTTAGCTTCCGGAGCCGTTAGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCTATGGTGCGGGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTTATTAGACTTATTCAAGATCATCAACCTGACTTCCTCCGCTTGATTAATGAGCCTCTTGAAGGAGAAGGGAATGTACTTGGGCAGCTTGCTGATGCTATGCCGCAGGCTATAACTGTAACCCCCGAGGAACGGGAAGCCATTCAACGGCTTGAGGATTTGGGTTTCGACAGAGCTCTAGTGGTGGAGGTTTTCTTCGCCTGCAACAAGAACGAGGAAATGGCTGCGAACTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAA 1398 47.93 MDSTFSYIKSRNSDPILLALFACAFGYRRSEALLALGYYHNSLESGVRRAAVVLHLCEGRDRVLKMKIFVKTLKGSHFEIEVQPQDMVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLDENKVAENSFIVIMLTKNKSSSGGTSSTTQAAPVSKAPQNTAPAPAATPVSTSEVPLPTSAPPATITTSSLPAPAPAPAPAQAPATTVLPESDVYSQAASNLVAGSNLEETIQQILLMGGGIWDRDTVVQALRAAYNNPERAVDYLYSGIPEQVEVPPAAHVPSTVPVTNPSAQPAQPAQPASATTTGPNANPLDLFPQGVPNLASGAVSSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNVLGQLADAMPQAITVTPEEREAIQRLEDLGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10121494 10128674 + Carg21582-RA Car18g00948 166650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00948 465 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 230 273 IPR015940 -
Car18g00948 465 MobiDBLite consensus disorder prediction 143 210 - -
Car18g00948 465 ProSiteProfiles Ubiquitin domain profile. 66 144 IPR000626 GO:0005515
Car18g00948 465 Pfam UBA/TS-N domain 418 453 IPR015940 -
Car18g00948 465 Pfam UBA/TS-N domain 232 270 IPR015940 -
Car18g00948 465 Pfam XPC-binding domain 338 393 IPR015360 GO:0003684|GO:0006289|GO:0043161
Car18g00948 465 Pfam Ubiquitin family 68 141 IPR000626 GO:0005515
Car18g00948 465 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 415 456 IPR015940 -
Car18g00948 465 MobiDBLite consensus disorder prediction 143 196 - -
Car18g00948 465 MobiDBLite consensus disorder prediction 291 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00948 K10839 RAD23, HR23; UV excision repair protein RAD23 - csv:101220491 622.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00945 Car-Chr14:5694473 Car18g00948 Car-Chr18:10121494 5.79E-97 dispersed
Car01g00167 Car-Chr1:871857 Car18g00948 Car-Chr18:10121494 2.88E-139 transposed
Car14g00563 Car-Chr14:3053149 Car18g00948 Car-Chr18:10121494 3.42E-143 transposed
Car14g00946 Car-Chr14:5697133 Car18g00948 Car-Chr18:10121494 4.42E-33 transposed
Car18g00948 Car-Chr18:10121494 Car04g01585 Car-Chr4:9177711 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00948 Car_Chr18 FPKM 1.493713 1.323757 1.571697 1.861331 3.887005 3.432463 3.801657 3.090936 3.0365 2.717887