Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00952 ATGGCTAACGACGCTACTCACCGGAAGCATCGCCGATCTGCTTCCGATGAGGAGGAGGAGAAGTCCTCGAAGCGTCATAAGCATCGTCATCATCGCCGCCACCACCACAGACATCGTCACGGTAGCAATAAGAACGAAGAAGAAAGCTATCGCGACCAGGACGATTGTGTTCCTCCTGTTGCTAACCGTAGATCTCGGCTTGAAGATGATGTGGAGGAAGGGGAAATTCTGGAAGAGGATGAGTCTGGCGTTCGCGAGAACGAGAGTGCGATGAAGGAGGCGGATGTGGAATATGGGGAAATTGAAGCTGATGGAAATTCTGATAGAGCTGATCGGTCCATTGTGGAGCGTTATTCGGTGGATGAATCATCTAATACCGAGGCAAATTTAACAGTGAAAAAGGAAGCAGAAATCTGTCCTAAAGATCAGAAGATTTCGAAAGAGAAGAATAAGTTATTTAATTTAGTAGACAAAGATGGCTATTATCTAAAAAAAGACTTAGAGGAGGAGAACACGACTTTCTACCAAACTAACAGTGGCCATAAACATGGCAATGATGTCAGCTTTTCCAGAAGTGAAGTGACTGGAACTAAATACGGCGATCTTGAACCCTGTCTAGAGGGTCGTAACAAAAGTGAATTTGATCAAGGATCTCTTGAGTTAGATGAGAGTCGCCACAAAAAAATGTCATCTTTTTCCAAAGGTGGCAGTATGAAAATAAGCGACATTGACAATAAAAAAGTGGTAACAGACAGAAGCACCTTGGGGAATTCAAAAAGGCCACAGTTGGAAAGGGCTGAAGATAAGTCCCAGGATTTTACGCCATCAACATCTCATGATCGATTCATTGATGCATCAGATTGTAGGAGTAGATCAAGGTCAAATTCTCACTTCAGGGGGCAATCTCAGTCTCGTGAAACAGCAGAAGAGGAGGTGGAATCCAAGAGGAGTCATCATCGTGGTTCAGATCGTTTGGGATTTGATGAGCATGCTAGGGGAGAGGGAAGGCATCGAAGCAGGGATACAAAGGACAGAGGGAGAAGTAAGATAGAGGTGGATAGGGACTGGTCAAAGGAAAAAGAACGCGAAAAAAGCAAAGACAAAGATGTTGAGAGAGATAAGCACAGGTATGATGAAAGAGAAAGAGGAAGGAGTAGGGATGGAAGGAAGGAGGTAGAACGAAATAGGAGTAGGGAAAGAGAATTGGATAGAGATAGGAGGAGGGAAAAGGATGTGGAAAGAGACAGGAGAGTGAAGGAAAGGGATCGGAGTAGGGAAAGGGAGGCAGAAAGAGATAGAAGAGTGGATAAGGAAAGAGATTGGAGTAGGGAAAGAGAGGTAGAGAGGGATAGAAGAGCAGAGAAGGAAAGATGTAGGAGCACAGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAGGATAGGAGCAAGCACAAAGAAGTGGACTGGGATGGGAGAAGGGATAGGGACAGAGCTCGGAATGATGATAAGGAGGCCGAATATAGTGATAGAAACAGAGACAAGGAAAGGGTGAGGGAGATGTCAAAGGACCGGTTCAGGGACAAAGAATCAGATAGAGAGAGACGAGATGATAGAAATAAAAATAAAGCCAGTGATATTTTAAGTAGCAAGGATAAGTATGGGAACCTTGAACATGGCTATACTAAAGTTTCTAGTAAGCAGTCTAGACGTTACGAGAATGAATCTGGTCAGAATGGAGGAAGAAATGCTTATGAAAAGCATGGTAGTTTTAAGAAAAATGCTCTTGAAGGAGGTGAAGGCAATCTAATGAGTGATCACGATGAAGAGGAAGAGGATGAGGACAACATGTCATTTCAATTTGCTGATCAAGAAGAGGAGTACCTTAACAGAATCAAGGAGGAGAGTAGAAGGAGGAGTCAAGCAATCTTAGAAAAATACAAGTGTCAGCAGTTAGAGAAACAAGTAAAGCCTTCTTTGAAGGAATCTGAGAAAGATAAGGATTCCACAGATGATTCTTCTCAATCAGAAGCTGGTGCTCATGCTATTCCAGACTTGGTTGATGGAGTGGTGGATGATAGTGTTGCTGACTCATCTTTTGTTGTGGAAAAATCACCACAACAAAATGGAATAGCTGCGTCTGATAAAACTGTTGGTACCAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGATGGAATATTCTGTGACGATATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGCAAAGGAGATGGTTTGCGTATAGAGAGGAGTGGTCTTCATGACAATTGGGACGATGCAGATGGATATTATAACTATCGATTTGGTGAAGTCCTTGATGGTCGGTATGAAATTGCTGCTGCTCATGGAAAAGGTGTCTTTTCAACTGTAGTCCGTGCCAAGGATCTCAAAGGTGGTCATGATGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTTTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTACATATGAATCTACGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTCAATGAGGGCAAAAATGTGCTGAAGCTTTGTGATTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAATTACCCCATACCTTGTTAGCCGGTTTTATCGTGCCCCTGAAATAATTTTAGGGCTGCCGTATGACCATCCAATGGATATCTGGTCTGTGGGTTGCTGTTTGTACGAGCTGTCTACAGGAAAAGTCCTTTTTCCAGGTCCTTCTAACAATGACATGCTGCGCCTGCACATGGAATTAAAGGGCCCTTTTCCAAAGAAGATGCTCCGCAAGGGAGCATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCTTCTGAGGAGGATCCTGTTACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTTGACAAAATTTTTGTATTGGATCCAGAAAAAAGGATGACAGTATCACAAGCATTGAACCATCCGTTCATCACTGGCAATCTTATTTGTGATGACCTAAGCTTCTGGCACAATTATGGGATGATTGAATTCAGAAGGGGTCATATTGGTCAGGAGTGGCGGGTTCTTTCAGTGGAATGTACTGTTTCTATTGATGCCTGCTTCTGCTCTGAGAGAACCTTCCAGTGCTTAAGTGATTTAGAGGCACTCAGAAGAAGTCGTTTGAATTTCCTAATGAATTGCATTGTGCTGATCCATGGTTTGGTCGTTTATGGAGGCACTAGCATTGGAGAGGGCAAAATTCCCATCATCCCCATTCTCTTGTCTACTAACAGCGTTAAGGGTGTGCATGGCAATCTAATTCCTGTACTTCACCGCTATTCGCTTGGGGAGGAAGTCAATCCGATGGATTTCCCCTTCGTCGTCAATAGCATGGGCCCCCTCATATTTCAGGTCTTTGGCAATCTTTTGTGTGTTTTGGTGGTTCTAAAGCAAGGCAATATCTACGAAATTGCTATTATGCTTTATTCATCTGAAGGGTCATTCAGAAAATTCTTCAGCTTTCTAGACACTCGGATTCGCATTTACAGCAAGACTCGGTAG 3771 42.8 MANDATHRKHRRSASDEEEEKSSKRHKHRHHRRHHHRHRHGSNKNEEESYRDQDDCVPPVANRRSRLEDDVEEGEILEEDESGVRENESAMKEADVEYGEIEADGNSDRADRSIVERYSVDESSNTEANLTVKKEAEICPKDQKISKEKNKLFNLVDKDGYYLKKDLEEENTTFYQTNSGHKHGNDVSFSRSEVTGTKYGDLEPCLEGRNKSEFDQGSLELDESRHKKMSSFSKGGSMKISDIDNKKVVTDRSTLGNSKRPQLERAEDKSQDFTPSTSHDRFIDASDCRSRSRSNSHFRGQSQSRETAEEEVESKRSHHRGSDRLGFDEHARGEGRHRSRDTKDRGRSKIEVDRDWSKEKEREKSKDKDVERDKHRYDERERGRSRDGRKEVERNRSRERELDRDRRREKDVERDRRVKERDRSREREAERDRRVDKERDWSREREVERDRRAEKERCRSTDREGNRDRRREREKDRSKHKEVDWDGRRDRDRARNDDKEAEYSDRNRDKERVREMSKDRFRDKESDRERRDDRNKNKASDILSSKDKYGNLEHGYTKVSSKQSRRYENESGQNGGRNAYEKHGSFKKNALEGGEGNLMSDHDEEEEDEDNMSFQFADQEEEYLNRIKEESRRRSQAILEKYKCQQLEKQVKPSLKESEKDKDSTDDSSQSEAGAHAIPDLVDGVVDDSVADSSFVVEKSPQQNGIAASDKTVGTKGLGEGTPKAEGSDGIFCDDIFGETPAAVRKMGKGDGLRIERSGLHDNWDDADGYYNYRFGEVLDGRYEIAAAHGKGVFSTVVRAKDLKGGHDEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLPYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGNLICDDLSFWHNYGMIEFRRGHIGQEWRVLSVECTVSIDACFCSERTFQCLSDLEALRRSRLNFLMNCIVLIHGLVVYGGTSIGEGKIPIIPILLSTNSVKGVHGNLIPVLHRYSLGEEVNPMDFPFVVNSMGPLIFQVFGNLLCVLVVLKQGNIYEIAIMLYSSEGSFRKFFSFLDTRIRIYSKTR 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10140177 10150458 + Carg21578-RA Car18g00952 166654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00952 1256 MobiDBLite consensus disorder prediction 696 710 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 696 725 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 1 112 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 25 40 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 649 683 - -
Car18g00952 1256 ProSiteProfiles Protein kinase domain profile. 783 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00952 1256 MobiDBLite consensus disorder prediction 198 632 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 1 24 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 303 565 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 83 112 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 599 616 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 41 71 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 204 230 - -
Car18g00952 1256 MobiDBLite consensus disorder prediction 649 669 - -
Car18g00952 1256 Pfam Protein kinase domain 895 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car18g00952 1256 MobiDBLite consensus disorder prediction 261 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00952 K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1] - csv:101220260 1417.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g01262 Car18g00952 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00952 Car-Chr18:10140177 Car06g00276 Car-Chr6:1557032 2.43E-34 dispersed
Car15g01262 Car-Chr15:9852653 Car18g00952 Car-Chr18:10140177 2.13E-26 wgd
Car18g00952 Car-Chr18:10140177 Car04g01582 Car-Chr4:9160521 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89538 PF00069 Pkinase 3.60E-23 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00952 Car_Chr18 FPKM 0.0 0.0 0.0 0.0 0.373993 0.0 0.0 0.0 0.0 0.0