Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00968 ATGGACCAACCCACCACTTCCATTAAATCTCCGCCACCCGACACCAGTCTCGGCGCCGCTACCAGTCTCGTTTTGGACTCTGCTGACTCCAGCTCCGCCGTCGGTGGCGGCGTCGAGGCTGAATCCAGGAAGCTACCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAATGGCCGATGGGGCGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGAACATTCAATGAAGAAGATGAAGCCGCACGTGCCTACGACGTGGCTGCTCAACGATTCCGTGGTCGTGACGCCGTTACCAATTTCAAAACGTTATCTCACGGCCAAGTAGACGACGTCGTATCCGCCTTTCTTAACTCTCATTCCAAAGCTGAAATCGTTGACATGCTACGTAAACATACCTACCTAGACGAACTACACCAAAGCAAACGAAACGCCGATTTGTTATCTTCGGATCGTAAAAGAAACGGTTCGTTATTATCCGGTCCGGATAATGAACCGGATTCCGCTCGGGAACTTTTATTTGAAAAAGCCGTTACGCCTAGCGATGTTGGGAAATTGAACCGTTTAGTTATCCCTAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCGCCGGTTCCGCCGGTTCAGCAGCTTCGTCCAAAGGACTTCTCTTAAACTTCGAAGACGGCGTCGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGTCAAAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTAACAGCCGGTGACGTCGTGAGCTTCTTGAAATCGACCGGTGAAGATAAGCAGCTATACATTGAATGGAAGGCGAGTAAGAGTGCAGCCTCGACCGGGTCCAACACGAACCCGGTTCAAACGGTGAGATTATTTGGAGTGGACATTATGAAAGTAACGCCGAGTAGTGGGTGCGGTGAGAAGAGGAGAAGAGAAATGGAGTTTATGAGTTCAGAATGTAACAAAAAACAAAGGATCGTCGGAGCATTGTAA 1032 50.39 MDQPTTSIKSPPPDTSLGAATSLVLDSADSSSAVGGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKTLSHGQVDDVVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNADLLSSDRKRNGSLLSGPDNEPDSARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSAGSAGSAASSKGLLLNFEDGVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLTAGDVVSFLKSTGEDKQLYIEWKASKSAASTGSNTNPVQTVRLFGVDIMKVTPSSGCGEKRRREMEFMSSECNKKQRIVGAL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10229397 10230428 - Carg21562-RA Car18g00968 166670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00968 343 Pfam AP2 domain 49 96 IPR001471 GO:0003700|GO:0006355
Car18g00968 343 MobiDBLite consensus disorder prediction 28 49 - -
Car18g00968 343 Pfam B3 DNA binding domain 176 283 IPR003340 GO:0003677
Car18g00968 343 MobiDBLite consensus disorder prediction 148 169 - -
Car18g00968 343 ProSiteProfiles AP2/ERF domain profile. 49 104 IPR001471 GO:0003700|GO:0006355
Car18g00968 343 ProSiteProfiles B3 DNA-binding domain profile. 176 287 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01958 Car-Chr4:13539041 Car18g00968 Car-Chr18:10229397 2.09E-130 dispersed
Car11g00706 Car-Chr11:4034084 Car18g00968 Car-Chr18:10229397 2.14E-51 dispersed
Car18g00968 Car-Chr18:10229397 Car17g00502 Car-Chr17:4446191 2.73E-45 dispersed
Car18g00968 Car-Chr18:10229397 Car04g01569 Car-Chr4:9094245 2.36E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5198 PF02362 B3 2.20E-26 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00968 K09287 - csv:101203784 535.798