Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00972 ATGCGTGGGGAGGATCAAGAACAGGATCATCATCATCATCAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAACTACAAAACAACACCACCGATCATATTATCTATGGAGATCATCACCATCATGGAGCTGGAAGAGGGTTGATTTTCCCGGCCGACGTCGTGTCGCCGGTTCTAAACTCGTGGCCTCCGCTCAACCCATTTCTCATTCCTCCTCCGCCTCCGCCTCCGCCACCGACATCGTTATGTTCGTCGTCGTCGTATGGTAATCTTTTTAACCGGAGACCGGCTAATTGTCTTCAATTTGCTTATGATGGAACTTCCTCAGCGGACCACTTGGGTCGAATCATATCAACCACGCTTGGACCAGTGGTTCATCATGGCTCAACTGCTCCCTTTGGATTACAAGCTGAGCTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCGGAGAGAAGAAGAAGAGAAAGAATCAATAATCATCTTGCTAAGCTCCGGAGCTTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTACTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATCCCAACAGACATCGACGAGCTAACAGTGGACGATGCCTCAGACGAGATGATGATCAACGGCGCCAAATTTGTAATAAAAGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACACTGAAATCCTTGCGCTTAAGAACCCTCAAAGCTGAAATCACAACCCTTGGTGGGCGCGTGAGAAATGTGCTGTTTGTCACCGGTGAAGACGACGAGCCATCAACTGACCATAATAACAACAATAATAACAATAATAATAATAATCCCAATTCAGACAGCCAACAACAACAACAACATAGTATCAGCTCAATTCAAGAAGCATTGAAGGCTGTGATGGAAAAAACAGGACCGGATGATTCTTCGTCAGGAAACATTAAACGACAAAGAACAAATAACATCAATATCCTTTAA 1104 44.02 MRGEDQEQDHHHHQHQGECSQTIENMFQEQLLLHQQLQNNTTDHIIYGDHHHHGAGRGLIFPADVVSPVLNSWPPLNPFLIPPPPPPPPPTSLCSSSSYGNLFNRRPANCLQFAYDGTSSADHLGRIISTTLGPVVHHGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTDIDELTVDDASDEMMINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDEPSTDHNNNNNNNNNNNPNSDSQQQQQHSISSIQEALKAVMEKTGPDDSSSGNIKRQRTNNINIL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10270636 10273271 - Carg21558-RA Car18g00972 166674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00972 367 Pfam Helix-loop-helix DNA-binding domain 168 214 IPR011598 GO:0046983
Car18g00972 367 MobiDBLite consensus disorder prediction 300 367 - -
Car18g00972 367 MobiDBLite consensus disorder prediction 308 336 - -
Car18g00972 367 MobiDBLite consensus disorder prediction 348 367 - -
Car18g00972 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g01586 Car18g00972 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00735 Car-Chr6:4866289 Car18g00972 Car-Chr18:10270636 1.08E-39 dispersed
Car18g00972 Car-Chr18:10270636 Car20g00188 Car-Chr20:1049170 5.59E-30 dispersed
Car18g00972 Car-Chr18:10270636 Car04g01586 Car-Chr4:9186384 4.77E-160 wgd
Car18g00972 Car-Chr18:10270636 Car04g01966 Car-Chr4:13795642 1.50E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5200 PF00010 HLH 1.80E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00972 - - csv:101214615 432.95