Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00983 ATGTTATTTGGGCCTGGCCGAACCCATTTGAAGCCCAAAGATTTGACCGAAGATAACGTCGACGATGAGTTCTGGACTGTTTCACTTCGGAATCGGCGAGTCAACTCACCGATTCAAAGCGGCGGCATCAACTCCATTGGCGATACATCTGAGTTAATCTATTCAAAATCCACACAGCCCCAGATGGTTGTTCTACTCTCAGCTTCAGCTTTCGCGATCTCTGAACTTCTCTTCAGCTCAACTTTATACTCCATCCGGAGTAAAGGGTATCTTCCTAATTACTTAAGCGAGCGACCTATCTTCTTAAATGAAAGATGTAATGGAAACCCATTGCATCTTTCATCATCATCATCATCATCATCATCATCATCATGTTGTTCTTGTTGTGTTTGCTATGCATTTCCAACCCACAGATTGCCTGTAGGCCCTAGCCTTTTATATGGGTCGAGGCAATCTACCCTGCTTAAATGGTCCATTTCTAGGAGGTTGATGTTGTGTGGCCGAAATCGGTTCTGTTATACGCTTCCGGAATATGGGCATGTTCTGGATTGTTGTGAGGTTCCTTTCTCTGTTGTTGATTGTAAGGCTTGTCATTGTAGTGAGGGAAGGAGATATAGACAATGTTGTTTGAATTCTGAGGGTGATTTTGAATGCGACGAATCGGATGGATTCGATGAAGAGGACATTGCTGAGGCAATGATCAGTTTGATAAGGGAGGGTTTTGGTAGTCAGGGGAAAAGTAGGTCGTCTAAGAGGGTGGAAGTGGGGAACCGAGGAAAGTCCGGAGCTAAGGAGAGTAGTTTAAGTTCGTCGAGAATAGTAGAACTCGAGAACAGGGCGAGGAGAGGTGTTGAGGATAAAAGGTTAAGTTCATTTGAAAAGATAAGAGTAGATAGAAAAAGAGAGAGTGGCGATCATCACAAGAAAGAAGAGAGGAAAAGCAAACAGAATAATAAAGTCGGATCGATCGCGGTTGAGTTGAGGAAAAATGGATATAAACTGAATGGAGATCGGTTAGTTCATTCAAGAGGGGATAATCAAAGTTTGAGAAAAGAAGGGTCTACATGTTCATCTTATTATTCGCTTTCCTCCTCTGGGGATATTGAGGATGATGCTGAAGTGGAAGACAAGAACGTGCAATTCGTTGAGGAATTTTCCGGTGGGTACAGGTACGACTCCGTGAGTGATGTAGGAGAGAAATTAGATGGGCGGATCAAGGAAGAATACAAGAGTCAAGGAGATGATGAGAAGGGGCGAGAAGAGGAATCCGTGCAAGGTGATATTACAGAACGGAATCATGCTAATTGGCATTTGAGGAAGAACTCTGAGACGAAACCTAGTCAAGGATCAACACGAGTAACATCCTCTATAAGTGAAACCTCTGAGACGAACTCAAGATTGTCAAGGACTAGGGAAAGTGATCATGTAAGTACTTCAAGTTCCAAGAAGAAGTTCGTTGACAAGGAAGAGGAGTTGAAAATGGCGGCGATTTTGAACGAGCAATCGAAACAAAATGTATCAGGTAATAAAGTGGGTGGTGTTTATATAAATGAAGGGAAAAAACTTGCTGAAGTATCAGAAATACGGCACGGTAAAGCTGAAGAAATTTCTCGTTCTCAGAAACGACTTACCATCAAGAATGAAAAGCTAGAATTAGATGCAAATCTCGTCAAGAAAGCAAGCAATAGTAGTCATGAAACTGTTCGTCCTGTCCTTCAAGAAGAAAGTTTGAGACGAACTTCGTCGAAAAATAGGAAAACCGAGAGAGAAAGGACCTCTCATCAGATAAGTCAGTCAAATGCAGTGATTAACGCAAGTGAAAGTACCGACGTACACGTAACTTCTAATCAAGAGGTTGAAGAAAGACATCATCAAATAGGAAATCATGCCATTGGGGAAATGGGTTCAACACAAAAATTTCTTCATCTTGGTGTTATATCAGTAGCCAAAGATGGTAATACCAACACCTCTGTTTCAAGTTCCGAAGTTAGAACACGAAACGAGGAACAAAATGCAGCATCAAACCTCATGGCTAAAGACAAAAAGTCTTCGATGGTACATAAAGCTTCTCCGAGCGTTATCTCCAGAAAAGGTTCCCAAGATGCCACGAACGTTTCACTGCTTCACGGGACTGATAAAATATCTTCTACGTATTCTGAAAAAACATTTGAAAATAGAATCTTCGAGCAAGAAACTAATAGATCATCAGTGGAAAAAACTGTCAAGGAAACCGTAATAAGAACTGGTCGAAATAATCATCGTATGGTGCAATCTGAATCAGGAAACGAGGTTAGAGATCATGCAACAAAGTTAAAAGTTCATGGATCGTTTAGTTCAAGTTCCGAAAGTAGTTACCAACGGATTGACGTGAATGAGCAAGAAAGTAAAGGCTCGCAGGCTATGTTAATGCCTCCGCCATCTCAGCTTGTAGCTAGAAATCCGTCACGAACAGATTCTACTAGTGAAATGGCAAGCCAAATAGTTTCAAGAAGAGCGTCAGGAAGTTCGGGTGCTTCCTACGTGCAGTCAGGGGGAAGTCCAGTTTTGCACGGCAAGTCCTACAGAGAAAGCGGGGTAGACGAGAGTACTGGGGAGCCAACCTACCTTGTCAATCCTGGTGATACTCTAGGTTCAGCTGACCATTTAGAGAGGTCGTCTGCACCGTTCGTTGGGGAGTCCATTGAGAAGTCCAGGAATGAACCGTTGATTTCCGAAATCCAGAAGGAAGACAATGTCTCTGAAGTAGATTTACTGCATGAAGAGAAGCATGGACAAAAGAATTTTGTAGATTATCAAACGAAGGACCATGACTCGAAGCTCTCATCACGGAGTTCGGGAAGCAAGGGTCCTTCTGATGAAATGTGGCATGTAATGGACTCGACTACTGAGCAGCAGCCTCCGAAAACTGAAGATCCTGAGACTAGTGCACATAGTGAGAATGCAATTGTCAAGAGAAGTGGCAGATCGTTGTGGAATGTCATTTCAGATATAGTTCGTCTCCGTTGGGCTTCACGTGCCGAAACCTCTGATTCAGCTGTAAGATCAGGTGGAAGAAATTCACCAAACGAGTCTGTTAGTAACGAGACATGGTTCTCTGGCCGTGAACATGAAGAAACTGATAATACAAGAATCGGAAGAACTGCAGTTTCTCAATTCACTTCGTCGGATCGGTTAGAAGAACCGAAAAATACATATCATGAAGTAGATACCCCTCCTTCCCCAAATGTAATGGGGATCGAGCCATCAAATGAAACTTTGTTAATTTCTGGAGAGGCGATCTTAACAGATGGTAGGAAGGTTGACGTTATTTCTTCTGGTTCGGATATAGAACGGTCATCATTACCACTGTCACCCCGAGGTTCTCTCGTTATCGATGAAATTTCTCATAGTGGTAAAACGGATGCCTCCGCAAGCAGCTCGGCTGAGCGGATGGGGCGTTCTTCTGATGCAACGTTACTAGAGATATCAACAACTGGAACCAAGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCTTAAAGATCGATTCGACGAATGGGAAGAAGCATACATACTCGAGACTGAGCAGCGAAAAATGGACGAAATGTTCATGAGGGAAGCGCTTGCTGAAGCCAGGAAGGCGGCTGATACCTGGGAGGTGCCTGTGGGAGCAGTATTGGTGAAACATGGAAAAATTATCGCTCGTGGCTGCAACCTGGTCGAGGAGCTGAGAGATTCCACAGCCCATGCTGAAATGATTTGTATTCGGGAGGCTTCAAAGCAATTAAAGTCATGGAGACTTGCTGTAATGTTCTGGGCTGTTTTTGACTTAGACCATTTCGTACGTTCACAGGAGACGACGCTGTACGTGACGCTTGAACCGTGCCCTATGTGTGCTGGAGCGATACTACAAGCACGAGTTGAAAACCTTGTATGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATCAGACTTTTTCCTGATGGTGGCGAGGTAAATGCCTCGGAACAGGCTGAGAAACCTGCTGCACCTGTTCATCCGTTCCACCCGAAAATGACGATACGACGAGGTATATTGGCGTCGGAATGTTCTGATGTAATGCAACACTTCTTTCAGCTAAGGAGGAGAAAGAAAAAGAAGGAAAACACTCCACCTCTGACCATTGCTCATCATCATCATCCATCAAAATTTATTTCTAAGATGCATAATATTTTTCACATATTGTTCTGTTTGTAA 4239 43.38 MLFGPGRTHLKPKDLTEDNVDDEFWTVSLRNRRVNSPIQSGGINSIGDTSELIYSKSTQPQMVVLLSASAFAISELLFSSTLYSIRSKGYLPNYLSERPIFLNERCNGNPLHLSSSSSSSSSSSCCSCCVCYAFPTHRLPVGPSLLYGSRQSTLLKWSISRRLMLCGRNRFCYTLPEYGHVLDCCEVPFSVVDCKACHCSEGRRYRQCCLNSEGDFECDESDGFDEEDIAEAMISLIREGFGSQGKSRSSKRVEVGNRGKSGAKESSLSSSRIVELENRARRGVEDKRLSSFEKIRVDRKRESGDHHKKEERKSKQNNKVGSIAVELRKNGYKLNGDRLVHSRGDNQSLRKEGSTCSSYYSLSSSGDIEDDAEVEDKNVQFVEEFSGGYRYDSVSDVGEKLDGRIKEEYKSQGDDEKGREEESVQGDITERNHANWHLRKNSETKPSQGSTRVTSSISETSETNSRLSRTRESDHVSTSSSKKKFVDKEEELKMAAILNEQSKQNVSGNKVGGVYINEGKKLAEVSEIRHGKAEEISRSQKRLTIKNEKLELDANLVKKASNSSHETVRPVLQEESLRRTSSKNRKTERERTSHQISQSNAVINASESTDVHVTSNQEVEERHHQIGNHAIGEMGSTQKFLHLGVISVAKDGNTNTSVSSSEVRTRNEEQNAASNLMAKDKKSSMVHKASPSVISRKGSQDATNVSLLHGTDKISSTYSEKTFENRIFEQETNRSSVEKTVKETVIRTGRNNHRMVQSESGNEVRDHATKLKVHGSFSSSSESSYQRIDVNEQESKGSQAMLMPPPSQLVARNPSRTDSTSEMASQIVSRRASGSSGASYVQSGGSPVLHGKSYRESGVDESTGEPTYLVNPGDTLGSADHLERSSAPFVGESIEKSRNEPLISEIQKEDNVSEVDLLHEEKHGQKNFVDYQTKDHDSKLSSRSSGSKGPSDEMWHVMDSTTEQQPPKTEDPETSAHSENAIVKRSGRSLWNVISDIVRLRWASRAETSDSAVRSGGRNSPNESVSNETWFSGREHEETDNTRIGRTAVSQFTSSDRLEEPKNTYHEVDTPPSPNVMGIEPSNETLLISGEAILTDGRKVDVISSGSDIERSSLPLSPRGSLVIDEISHSGKTDASASSSAERMGRSSDATLLEISTTGTKDGEVKQRKLQRNKQVLKDRFDEWEEAYILETEQRKMDEMFMREALAEARKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKSWRLAVMFWAVFDLDHFVRSQETTLYVTLEPCPMCAGAILQARVENLVWGAPNKLLGADGSWIRLFPDGGEVNASEQAEKPAAPVHPFHPKMTIRRGILASECSDVMQHFFQLRRRKKKKENTPPLTIAHHHHPSKFISKMHNIFHILFCL 1412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10337126 10341732 - Carg21546-RA Car18g00983 166685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00983 1412 MobiDBLite consensus disorder prediction 924 942 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 408 440 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 465 485 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 924 981 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 297 317 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 297 322 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 408 485 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 241 271 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 1044 1058 - -
Car18g00983 1412 Hamap tRNA-specific adenosine deaminase [tadA]. 1202 1376 IPR028883 GO:0002100|GO:0008251
Car18g00983 1412 MobiDBLite consensus disorder prediction 1128 1149 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 774 881 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 774 802 - -
Car18g00983 1412 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1196 1334 IPR002125 -
Car18g00983 1412 MobiDBLite consensus disorder prediction 654 678 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 1008 1029 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 654 702 - -
Car18g00983 1412 Coils Coil 1167 1187 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 441 464 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 688 702 - -
Car18g00983 1412 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 1196 1311 IPR002125 -
Car18g00983 1412 Coils Coil 533 553 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 560 598 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 1131 1149 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 571 593 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 810 843 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 1006 1078 - -
Car18g00983 1412 MobiDBLite consensus disorder prediction 336 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00983 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - csv:101215576 1817.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00336 Car-Chr11:1827600 Car18g00983 Car-Chr18:10337126 5.11E-14 dispersed
Car12g00829 Car-Chr12:7967963 Car18g00983 Car-Chr18:10337126 9.48E-14 dispersed
Car18g00983 Car-Chr18:10337126 Car10g00356 Car-Chr10:1747827 9.55E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car18g00983 Car_Chr18 FPKM 4.267348 4.809315 6.013018 5.492251 6.124093 5.798839 5.904321 8.974398 8.896232 9.119719