Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car18g00984 ATGAGCGGCGGCCGAAGGAGGAAGCTGCATTTTAGCAAGATCTACTCGTTTGCGTGTGGGAAAGCTTCTTTGAAAGATGATCACTCACAAATTGGGGGTCCTGGGTTTTCTCGAGTGGTGTTCTGTAATGAAGCTGAGTGTATTGAGGCTGAAATACGTAACTATGTTGATAATCATGTTAGTACCACTAAGTATACTTTGGCTACTTTCTTGCCTAAGTCATTGTTTGAGCAATTCAGGAGGGTGGCTAATTTCTTCTTCTTAGTTACTGGGATTCTTGCTTTTACTCCTCTTGCTCCTTACACAGCCGTCAGTGCAATTCTTCCTCTTATTATTGTCATTTCAGCTACTATGATCAAGGAAGGTATTGAAGATTGGAGGCGGAAGAAACAGGATATTCAGGTCAACACTAGAAAGGTTAAAGTGCATCAAGGTAATGGAGTTTTTGCTCATACAGAGTGGAAAACTTTGAGGGTGGGTAATGTAGTGAGAGTGGAAAAGGATGAATTCTTTCCAGCAGATATCATCTTGCTTTCATCCAGTTACGAGGATGCCGTCTGCTATGTCGAGACAATGAACCTCGACGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTAACTTCGCGTATGAACGAGGATTCGATCTTCGGAAGCTTTAAGGCTATCATAAAGTGTGAGGATCCAAATGCAAATTTATACAGTTTTGTTGGAAGTATGGAGTTGGAAGAGCAACAATATCCGCTATCACCTCAACAACTACTCCTTCGAGACTCGAAACTCCGGAATACAGATTATATATATGGGGTTGTTGTCTTTACGGGTCGCGACACAAAGGTTTTTCAAAATTCTACTGACCCGCCTTCGAAAAGAAGCAAAGTCGAGAGGAAAATGGATCAAATTATATACTTTTTGTTTGGTCTTCTGTTCTTGCTTGCTCTTATAGGATCTATCTTTTTTGGCTTTGTGACTGGCGATGATTTGAACAATGGGAAAATGAAGAGATGGTATCTCAGGCCTGATGATGCTGAAGTTTTCTATGATTCAAGACGGGCTCCATTAGCTGCAATTTTCCATTTTCTTACAGCACTGATGTTGTATAACTACTTCATTCCGATATCACTCTACGTGTCGATCGAGATCGTGAAAGTTCTTCAGAGCATATTCATCAATCAAGATATTAATATGTACTACGAAGAAGCTAATAAGCCTGCACGTGCTCGCACCTCGAATTTGAATGAAGAACTTGGTCAAGTTGATACAGTACTTTCTGACAAGACGGGAACTCTGACATGTAATTCGATGGAGTTCATCAAGTGTTCAGTGGCCGGGACGGCTTATGGTCGTGGTTTCACAGAGGTAGAAAGGGCCATTGGTGGACTGAAGAATTCACCATTGTATGAAGCTGTAAATGGGGGGAATCAACAAGAGGATGTCACTAAGAAAACTTCACATGTCAAGGGCTTTAACTTTCAAGATGATAGAATTATGAATGGGAACTGGGTTTATGAGCCTAATGCAAATGTCATCCAAATGTTTTTTCGTCTTCTCGCCACTTGTCATACGGCGATACCTGAAATCAACGAGCACAGTGGTGAGGTGTCTTATGAGGCCGAATCACCGGATGAAGCAGCGTTTGTGATTGCAGCTAGGGAGCTAGGCTTTGAGTTCTATAAAAGAACACAGTCAAGCATATCACTCCATGAGTTTGAACCTTCATTAGGCAAGAAAGTTGATAGAACATATAAACTGTTGCATGTTTTGGAGTTCAATAGCACGAGAAAGCGGATGTCTGTCATAATAAGAAACGACGAGGGGAAAATAATATTATTCTGTAAAGGTGCAGACAGTGTCATGTTTGAAAGGCTTGGAAAGAATGGAAGGGAGTTTGAAGAGAGGACTAAGGAACATGTCAGCGAGTACGCCGATGCCGGGTTGAGGACTTTGATACTCGCCTACCGTGAGCTTGACGAGGAAGAATACAGAGAATTTCATCATAAGTTCACTATGGCCAAAAGCTCAGTTGATGCAGATAGAGAATCATTGATTGATAAACTTACAGACAAAATTGAAAGGAATCTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTTCCCGAGTGCATCGACAGGCTCGCTCAGGCGGGAATTAAGATCTGGGTTTTGACGGGCGACAAAATGGAGACTGCCATAAATATTGGTTTTGCCTGTAGCTTACTAAGAGAAGATATGAAGCAGATTGTCATTACTCTGGAGTCATCAGAAATTCAGGCAATAGAGAAGTCAGGGGATAAGACTTCCATCATCAAGGCGTCGAGGCAATGTGTTCGTGATCAGATTACTCGAGGGAGAGCTCAGATAAATTCATCAAGTGGGTCATCCGAAGCATTTGCATTAATCATTGATGGAAAATCGCTTTCTTATGCTTTAGAGGACAGTATGAAGGCATCGTTTCTCGATCTAACGATACGTTGCGCTTCTGTTATTTGCTGCCGTTCATCTCCGAAACAGAAGGCATTGGTAACAAGGTTGGTTAAAACTGGAACACGAAAAACAACTTTAGCTATCGGCGATGGTGCTAACGATGTAGGAATGCTTCAAGAAGCGGATATTGGAGTCGGAATTAGTGGTGCTGAAGGAATGCAGGCCGTTATGTCGAGCGACGTTGCGATTGCTCAGTTTAAATATTTAGAGCGCCTGCTTCTCGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTCTTCTATAAGAATATTACTTTTGGTTTTACCATATTCTTATACGAAGCATTCTCATCATTCTCTGGGGAACCTGTATATAATGATTGGTTTTTATCACTTTACAACGTTTTCTTCTCGTCGCTTCCAGTCGTAGCTTTGGGAGTCTTCGATCAGGACGTATCTGCAAGGCTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCATTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCTGTGATCATTTTCTTCCTTTGCACTGGCGCACTTGAGCATCAGGCATTCAACTCCGATGGGAAACCTGCAGGGCGGGAAATTCTGGGTGCGACGATGTACTCTTGTGTCGTTTGGGTTGTGAACTTGCAAATGGCGCTCGCTGTTAGCTACTTCACCTTGATACAACATCTTTTCATCTGGGGTTCCATTTCAATTTGGTATATTTTTCTCCTGATTTATGAGTCCATGACCCCCACCCTTTCAACCAATGCTTACAAGATCTTCACTGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTCCTTTTCTTTGTGGTGATCTCAACACTCATTCCTTACTTCTCCTACTCAGCATTACAGATGAGGTTCTTTCCTATGTATCATCAAATGATTTTATGGATTAGAAATGAAGGGCAACTAGACAACCAGGAGTACTGTAATATGTTGTGGAAGTACAAATTCCGATCCACGAGTGTAGGTTCCACAGCACGGTTAGCAGCCAAAAGGAACAACTCAAAACAAAGAAACCAGACTTATATTTGA 3588 42.2 MSGGRRRKLHFSKIYSFACGKASLKDDHSQIGGPGFSRVVFCNEAECIEAEIRNYVDNHVSTTKYTLATFLPKSLFEQFRRVANFFFLVTGILAFTPLAPYTAVSAILPLIIVISATMIKEGIEDWRRKKQDIQVNTRKVKVHQGNGVFAHTEWKTLRVGNVVRVEKDEFFPADIILLSSSYEDAVCYVETMNLDGETNLKLKQALEVTSRMNEDSIFGSFKAIIKCEDPNANLYSFVGSMELEEQQYPLSPQQLLLRDSKLRNTDYIYGVVVFTGRDTKVFQNSTDPPSKRSKVERKMDQIIYFLFGLLFLLALIGSIFFGFVTGDDLNNGKMKRWYLRPDDAEVFYDSRRAPLAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEANKPARARTSNLNEELGQVDTVLSDKTGTLTCNSMEFIKCSVAGTAYGRGFTEVERAIGGLKNSPLYEAVNGGNQQEDVTKKTSHVKGFNFQDDRIMNGNWVYEPNANVIQMFFRLLATCHTAIPEINEHSGEVSYEAESPDEAAFVIAARELGFEFYKRTQSSISLHEFEPSLGKKVDRTYKLLHVLEFNSTRKRMSVIIRNDEGKIILFCKGADSVMFERLGKNGREFEERTKEHVSEYADAGLRTLILAYRELDEEEYREFHHKFTMAKSSVDADRESLIDKLTDKIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFACSLLREDMKQIVITLESSEIQAIEKSGDKTSIIKASRQCVRDQITRGRAQINSSSGSSEAFALIIDGKSLSYALEDSMKASFLDLTIRCASVICCRSSPKQKALVTRLVKTGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFSSFSGEPVYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVHFSWLRILSWMFNGLCSAVIIFFLCTGALEHQAFNSDGKPAGREILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYESMTPTLSTNAYKIFTEVLAPGPSYWLVLFFVVISTLIPYFSYSALQMRFFPMYHQMILWIRNEGQLDNQEYCNMLWKYKFRSTSVGSTARLAAKRNNSKQRNQTYI 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10348396 10355190 + Carg21545-RA Car18g00984 166686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car18g00984 1195 Pfam Cation transport ATPase (P-type) 529 625 - -
Car18g00984 1195 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Car18g00984 1195 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Car18g00984 1195 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car15g01283 Car18g00984 CCT
Car15g01283 Car18g00984 ECH
Car04g01603 Car18g00984 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00910 Car-Chr4:5185579 Car18g00984 Car-Chr18:10348396 0 dispersed
Car13g00882 Car-Chr13:9281521 Car18g00984 Car-Chr18:10348396 0 wgd
Car15g01283 Car-Chr15:10038789 Car18g00984 Car-Chr18:10348396 0 wgd
Car18g00024 Car-Chr18:114729 Car18g00984 Car-Chr18:10348396 0 wgd
Car18g00984 Car-Chr18:10348396 Car04g01603 Car-Chr4:9266211 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car18g00984 K01530 - csv:101207148 2103.95